Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01040 ATGACCAAGTCTCCGAGTGAAAAGAATGGACTCAAGAAAGGTCCATGGACTCCCGAGGAAGATCACAAACTCATCGATTACATTCAGAAACATGGCCATGGCAAATGGCGAACCCTTCCCAAAAATGCAGGACTCAAAAGATGTGGAAAGAGTTGTCGGCTTCGCTGGGCTAACTACTTGAGGCCTGACATTAAGAGAGGGAGATTCTCATTCGAAGAAGAAGAAGCCATCATTCAGTTACACAGTGTTTTGGGAAACAAGTGGTCTACAATTGCTGCTAACTTGCCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACACTCACATCAAGAAAAAGCTAATCAAGATGGGGATTGATCCAGTGACTCACACACCTCGCCTTGATGTTCTTCAACTTGCCTCTTTTCTAAGCTCATCTATGTACAATTCACCTCAATTTAACAACTACCCTTTTCCTTCTATGGGAGGATCAATGATTAACCCAAGCCACCTTCTAAGTTTGCTCACAACTCTGCTATCATCATGTCAAAACAGAAACCCTGATGTCACATTGAATCATATTAATAATAATAACCAACTTAGTGGTAGCCCTCTACCCCAATGTTCCCAAACCATGCAACATGATTCTATACAAACCTTCCAACCAAACCAACTTCAAGAAAACCATATTGCTTATAAGACTAATCCTATGGAAGCTAAACTAGAGCATCAAATCTCTCCAATTGCTACCTCTTTTAGCCACCAAAGCACACTGCCAAATTTGTGGTATGATCACATAATAGATCTACCACAGGCACAATCATCATCAGCCATGCAATGTTTCTCATCTTCTCCCAAGTTGAACACTTTTGTCTTGGAAAATCAGATCGAGGGGATGCCGAATTTCAATCTGAGTTCTTTGTTATCGTCCACACCCTCGTCTTCTAGCCCAAGTACTTTGAATTCATCATCTTCCACCACATTTGTCAACGGAACCACTGAAGATGAAAGGGACACTTACGGCAGCAACATGTTGATGTATAACATTTCAAATGGCTTGAATGACTCTGGATTTTTGTGA 1065 0.4094 MTKSPSEKNGLKKGPWTPEEDHKLIDYIQKHGHGKWRTLPKNAGLKRCGKSCRLRWANYLRPDIKRGRFSFEEEEAIIQLHSVLGNKWSTIAANLPGRTDNEIKNYWNTHIKKKLIKMGIDPVTHTPRLDVLQLASFLSSSMYNSPQFNNYPFPSMGGSMINPSHLLSLLTTLLSSCQNRNPDVTLNHINNNNQLSGSPLPQCSQTMQHDSIQTFQPNQLQENHIAYKTNPMEAKLEHQISPIATSFSHQSTLPNLWYDHIIDLPQAQSSSAMQCFSSSPKLNTFVLENQIEGMPNFNLSSLLSSTPSSSSPSTLNSSSSTTFVNGTTEDERDTYGSNMLMYNISNGLNDSGFL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01040 354 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Cca10g01040 354 MobiDBLite consensus disorder prediction 303 330 - -
Cca10g01040 354 Gene3D - 10 66 - -
Cca10g01040 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Cca10g01040 354 CDD SANT 68 111 IPR001005 -
Cca10g01040 354 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Cca10g01040 354 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Cca10g01040 354 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Cca10g01040 354 CDD SANT 15 60 IPR001005 -
Cca10g01040 354 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Cca10g01040 354 Gene3D - 68 115 - -
Cca10g01040 354 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 343 - -
Cca10g01040 354 PANTHER TRANSCRIPTION FACTOR MYB30-LIKE 1 343 - -
Cca10g01040 354 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Cca10g01040 354 SMART sant 12 62 IPR001005 -
Cca10g01040 354 SMART sant 65 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01040 Cca-Chr10 12774404 12776204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01040 1 354 MYB Transcription Factor Family AT4G21440 46.543 2.66e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g01040 Myb_DNA-binding 3.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01040 K09422 - gmx:100820398 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01040 10 12774404 12776204 Cca10g01040 10 12774404 12776204 ECH