Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01035 ATGCTGATAGAACACGTAAATTATAGAATAATTTATATGGATAGCCATCAGGTTCAGGTGATGATAGTGTTGTGCTCTCTCTTATTCTCCCTCATTCCCAACATCACTGCAGTGAGTGTTATCACTCCAGATCAGCCCTTACATCACAATGAAACCCTGGTGTCAGCATCTGGAACCTTTGAAGCAGGTTTCTTCAGCCCAGGAAGTTCTCAGAGACGCTACTTTTCCATATGTTACAAGAATATATCACCTAGAACAATTGTGTGGGTGGCCAACAGAAACACCCCTTTAGATAACTCCACAGGAGTTTTCAGAGTCGATGATGAGGGAAATCTTGTTGTACTTGATGGCACAGGTGCAAGTGTTTGGTCATCCAATGCATCAAGTATTGCTCAGAAGCCTATTGTGAAGCTTTTGGACTCTGGAAACCTTGTTGTGAAAGATGGTGGTACAAATAGCCAAGAGAAGGTTGTGTGGCAAAGCTTTGATTTTCCTGGTGACACTTTACTTCCTGGGATGAAACTCAAAACCAGTTTTGTAACTGGTATGCATAATTCTCTGACATCATGGAGGGACCTAGAAGATCCTTCTCTGGGGGAGTTTTCATTGTATATTGATCCTCATGGTTTTCCTCAGAGAGTGATCACAAAGGGAGGGACTTGGTTGTATAGAGCAGGTTCATGGAATGGTTATCAGTTTTCAGGAGTTCCTTGGAACCTGTTGCATAATTTCTTCAATTATTATTTTGTGTGGACACAGGAGGAAGTGTATTATGAGTATGAGCTCATAGAAAGTTCGGTTGTAACAAGATTTGTGATCAACCCTGGAGGTCTTGATCAACGTTTCACATGGTCAGAGAGGACAAAGAGTTGGGAGCTTTTTGCCTCTGGCCCCCGGGACCAGTGTGAAAACTATGCCTTGTGTGGTATAAATTCTGTTTGCAATATTAATAACTATCCTATATGTGAATGCTTGGAGGGCTTTCTCCCCAAGTTTAGAGAAAAATGGAGATCATTGGATTGGTCTGGTGGTTGTGCTAGGAGAATGAATCTGAGTTGTGATAATGAAGATGGGTTTGTTAAGTATGAAGGAATGAGATTGCCAGACACATCTTCCTCATGGTTTGACACAAGCATGAGCCTTGATGAATGTAAGAGAGTGTGTTTGAGAAACTGCTCTTGCACAGCATACACAAGTTTAGATGTCAGAGATGGTGGCAGTGGCTGCTTGCTTTGGTTTGGTAACATTGTGGATATAGGAAAACATGCCTCCCAAGGACAAGACATTTACATACGAATGGCTGCTTCAGAGCTAGATCATACTTGGGATAAAAGTCACATTGACAAGAAGCTTGTGTTGATTTTGACAGCAATTAGTACAATCATCATAGGCGTAATATTAGGATCAGTCATATACATAAGGAGAAAACTTGAGAAAGCAGGGAAGACAAATATAATTGACCAAATGCATCACACTATAAAACATGAGAAGAAAGACATTGACTTACCAATCCTTGATTTATCAACCATTGATAATGCCACTAGTAACTTCTCTATCAGTAACATTTTGGGAGAAGGTGGATTTGGACCAGTTTACAAGGGTGTGCTGGCAAATGGACAAGAGATTGCTGTTAAGAGGCTTTCTAAAACCTCTGGACAAGGATTAGATGAGTTCAGAAATGAAGTTGTATTAATTGCCAATCTTCAGCATCGGAATCTTGTGAAGATTCTTGGGTGTTGTGTTCACGATGAAGAGAGAATCTTGATCTATGAATTCATGCCTAACAGGAGCTTGGATCTTTATATTTTTGGTTTGAAGCTTTTGACGCATACTATCTACTCTAGATTTACTTGTACACTCTTTACTGCTAAAATTATTTTATAA 1884 0.4002 MLIEHVNYRIIYMDSHQVQVMIVLCSLLFSLIPNITAVSVITPDQPLHHNETLVSASGTFEAGFFSPGSSQRRYFSICYKNISPRTIVWVANRNTPLDNSTGVFRVDDEGNLVVLDGTGASVWSSNASSIAQKPIVKLLDSGNLVVKDGGTNSQEKVVWQSFDFPGDTLLPGMKLKTSFVTGMHNSLTSWRDLEDPSLGEFSLYIDPHGFPQRVITKGGTWLYRAGSWNGYQFSGVPWNLLHNFFNYYFVWTQEEVYYEYELIESSVVTRFVINPGGLDQRFTWSERTKSWELFASGPRDQCENYALCGINSVCNINNYPICECLEGFLPKFREKWRSLDWSGGCARRMNLSCDNEDGFVKYEGMRLPDTSSSWFDTSMSLDECKRVCLRNCSCTAYTSLDVRDGGSGCLLWFGNIVDIGKHASQGQDIYIRMAASELDHTWDKSHIDKKLVLILTAISTIIIGVILGSVIYIRRKLEKAGKTNIIDQMHHTIKHEKKDIDLPILDLSTIDNATSNFSISNILGEGGFGPVYKGVLANGQEIAVKRLSKTSGQGLDEFRNEVVLIANLQHRNLVKILGCCVHDEERILIYEFMPNRSLDLYIFGLKLLTHTIYSRFTCTLFTAKIIL 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01035 627 Gene3D Phosphorylase Kinase; domain 1 478 592 - -
Cca10g01035 627 Pfam Protein tyrosine and serine/threonine kinase 519 602 IPR001245 GO:0004672|GO:0006468
Cca10g01035 627 ProSiteProfiles PAN/Apple domain profile. 353 434 IPR003609 -
Cca10g01035 627 SUPERFAMILY Hairpin loop containing domain-like 355 423 - -
Cca10g01035 627 SMART ntp_6 354 433 IPR003609 -
Cca10g01035 627 SMART tyrkin_6 517 627 IPR020635 GO:0004713|GO:0006468
Cca10g01035 627 CDD B_lectin 44 165 IPR001480 -
Cca10g01035 627 Pfam PAN-like domain 353 419 IPR003609 -
Cca10g01035 627 PANTHER - 23 604 - -
Cca10g01035 627 SUPERFAMILY alpha-D-mannose-specific plant lectins 87 195 IPR036426 -
Cca10g01035 627 SUPERFAMILY Protein kinase-like (PK-like) 496 611 IPR011009 -
Cca10g01035 627 Pfam D-mannose binding lectin 86 191 IPR001480 -
Cca10g01035 627 ProSiteProfiles Bulb-type lectin domain profile. 38 159 IPR001480 -
Cca10g01035 627 ProSiteProfiles Protein kinase domain profile. 517 627 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01035 627 Gene3D Hepatocyte Growth Factor 349 431 - -
Cca10g01035 627 PANTHER - 23 604 - -
Cca10g01035 627 SMART blect_4 44 165 IPR001480 -
Cca10g01035 627 CDD PAN_AP_plant 350 434 - -
Cca10g01035 627 Gene3D - 35 162 IPR036426 -
Cca10g01035 627 Pfam S-locus glycoprotein domain 223 331 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01035 Cca-Chr10 12649181 12652881 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01035 443 603 Receptor kinase-like Gene Family AT4G23190 49.080 3.44e-38 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01035 S_locus_glycop 2.4e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01035 - - ccaj:109805721 1245.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01035 10 12649181 12652881 Cca10g01035 10 12649181 12652881 ECH