Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01034 ATGGAAAGCTTCAAGGCTTTGGTTTTGTGCTCTCTTTTGTTGCACTTCATACCAGGGTTCAACACCCTTGACACCATTGCTCCAGGCCAATCACTCAAGGACAAAGAGACTCTAGTTTCAGCAGATGGGAGTTTTGAAGTGGGGTTCTTCAACTTTGGAGATCCAAATAGGCAATACTTGGGTATATGGTACAGGGGTATTTCTCCAAGAACAGTTGTGTGGGTGGCCAATAGAGATGCCCCAGTTGGAAAAGGGGTTTTGAATTTCACTGATGAGGGAAATCTTGTTATATTTGATGGCTCAGGGGCCATCGGGTGGTCCTCCAATGCATCAACAACTGCAAAGAAGCCTATTGTGCAACTCTTGGAGACTGGAAACCTTGTTGTGAAAGAAGAAAGCAACCCTGAGAATCTTGTGTGGCAGAGTTTTGATCTTCCTGGGGACACTTTGTTACCAGGGATGAGAATTAGAAGTAACATGGTAAGTGGTGGTTTTACTTCTCTGACATCTTGGAGAGACACACAAGATCCTGGTAGAGGTCTGTATTCATATCACATAGATACTCATGGTTTTCCTCAAATGGTGATCACAAAGGGAGGGGCATTGTTGTATAGAGTAGGTTCTTGGAATGGCAATATTTTTTCTGGAATTTCTTCTGAAACGCTGTACAAATACTTTAACTTCTCTTTTGTGATAACTGAGCAAGAAGTGTCTTATGGATATGAACTCTTGAACCAGTCATTTGTTTCAAGATATATGATCACAATAACAGGCCAAATACAACGTTTCTTTTTGTCTGATCTGACACATAATTGGCAGCTTTTCTACTCTGGCCCCGCGGATGGGTGCGACAATTATGCCATTTGTGGTGTGAATTCTAATTGTGATGCCAATAACTCTCCATCATGTGAATGCTTTCAGGGTTTCATTCCCACATCTCAAGAAAATTGGAATTCACATAACTGGTCTGAGGGATGTGTTAGGAGAGTTAATTTAGATTGTGGCAATAGTGATGGCTTTCTGAAGTATCAGGGAATGAAGTTGCCAGACACATCAACTTCATGGTTTGATAAGAGCATGAACCTTGTGGAATGTGAGAAATTCTGCAAGAAAAACTGCTCCTGCACTGCATATGCAAATTTAGATATTAGAAAGGGTGGAAGTGGATGCTTGCTTTGGTTTAACAACATTGTGGATGTGAGAAAGCTAACCTCTGGAGGACAAGACCTTTACATAAGAGTGGCAGCTTCTGAACTAGGCCATAACAAAGGCTTGAACAAGAGGATGCTTGCAGGAATTCTGGTAGGCTGTATTGTGTTCATTTTGGTCATGATAATATTGGGAGTGACCATACTTAGGAGGAAAAAGCGCGAGAATCCAGGGAGGAACCAAATAGTTAGCTGGAAGAATCATACTGACAACACAGAGAAGAACCAAATTGACATACCAATTTTTGGTTTTTCAACCATAGCTAATGCAACTAGTAACTTTTCCGTTAGTAACAAATTGGGAGAAGGTGGATTTGGGCCAGTTTACAAGGGTACATTGACAAATGGCCAAGATATAGCTGTGAAGCGACTTTGCAATAATTCAGGACAAGGACCAAAAGAGTTCATAAACGAAGTTGTGCTAATTGCCAATCTTCAGCACCGAAATCTTGTGAAACTTCTTGGTTGTTGCATTCAAGATGATGAGAGAATCTTGATATATGAATTCTTGATTAATAGAAGCTTGGACTACTTTATTTTTGATGAGTCTAGAAAAAGTTTGCTGCATTGGGCTCGACGCTTCCAAATTATTTGTGGGATTGCCAGAGGACTTCTTTATCTTCATGAAGATTCTAGATTAAGGATTATCCATAGAGACCTCAAGACCAGTAATATTCTTCTTGATGAAAACATGAATCCAAAAATATCAGACTTTGGTCTTGCTAGAACATTTGGAGATGAAGCTGAAGGCAAAACAAAGAGAGTAGTGGGAACTTATGGTTATATTTCTCCAGAATTCGCAGCCCGTGGGAATTTTTCAGTGAAATCTGATGTCTTTAGTTTTGGTGTTATCATACTAGAGATAGTTAGTGGAAAGAAGAATACAGAATATTTTGACCATCATGATCATGACCTTCTTGGACATGCATGGAGGCTGTGGTGTGAAGAAAGGCCATTGAAGTTGATAGATGAATCACTAGGTGAACCGATAACTCTAGCTGAAGATGTGTTGAGATGCATTCAGATCGGTCTTTTATGTGTACAAGACAGACCAGAGTATAGGCCAGATATGTCAGTTGTAATTCTAATGCTGAATGGTGAGAAACCATTGCCTAGGCCACGGGAACCAGCCTTTTATCCGCACCAATCTGGCTCTTCATCAGGAAATAGTAAACTGCAATCGACCAATGAGATCTCTACGTCATTGTTAGATGCAAGATAG 2430 0.4041 MESFKALVLCSLLLHFIPGFNTLDTIAPGQSLKDKETLVSADGSFEVGFFNFGDPNRQYLGIWYRGISPRTVVWVANRDAPVGKGVLNFTDEGNLVIFDGSGAIGWSSNASTTAKKPIVQLLETGNLVVKEESNPENLVWQSFDLPGDTLLPGMRIRSNMVSGGFTSLTSWRDTQDPGRGLYSYHIDTHGFPQMVITKGGALLYRVGSWNGNIFSGISSETLYKYFNFSFVITEQEVSYGYELLNQSFVSRYMITITGQIQRFFLSDLTHNWQLFYSGPADGCDNYAICGVNSNCDANNSPSCECFQGFIPTSQENWNSHNWSEGCVRRVNLDCGNSDGFLKYQGMKLPDTSTSWFDKSMNLVECEKFCKKNCSCTAYANLDIRKGGSGCLLWFNNIVDVRKLTSGGQDLYIRVAASELGHNKGLNKRMLAGILVGCIVFILVMIILGVTILRRKKRENPGRNQIVSWKNHTDNTEKNQIDIPIFGFSTIANATSNFSVSNKLGEGGFGPVYKGTLTNGQDIAVKRLCNNSGQGPKEFINEVVLIANLQHRNLVKLLGCCIQDDERILIYEFLINRSLDYFIFDESRKSLLHWARRFQIICGIARGLLYLHEDSRLRIIHRDLKTSNILLDENMNPKISDFGLARTFGDEAEGKTKRVVGTYGYISPEFAARGNFSVKSDVFSFGVIILEIVSGKKNTEYFDHHDHDLLGHAWRLWCEERPLKLIDESLGEPITLAEDVLRCIQIGLLCVQDRPEYRPDMSVVILMLNGEKPLPRPREPAFYPHQSGSSSGNSKLQSTNEISTSLLDAR 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01034 809 PANTHER S-LOCUS LECTIN KINASE FAMILY PROTEIN 13 809 - -
Cca10g01034 809 ProSitePatterns Serine/Threonine protein kinases active-site signature. 618 630 IPR008271 GO:0004672|GO:0006468
Cca10g01034 809 CDD STKc_IRAK 503 769 - -
Cca10g01034 809 ProSiteProfiles Protein kinase domain profile. 497 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01034 809 SUPERFAMILY alpha-D-mannose-specific plant lectins 58 210 IPR036426 -
Cca10g01034 809 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 13 809 - -
Cca10g01034 809 SUPERFAMILY Protein kinase-like (PK-like) 479 767 IPR011009 -
Cca10g01034 809 ProSiteProfiles Bulb-type lectin domain profile. 23 142 IPR001480 -
Cca10g01034 809 Pfam PAN-like domain 334 400 IPR003609 -
Cca10g01034 809 MobiDBLite consensus disorder prediction 775 809 - -
Cca10g01034 809 Gene3D - 20 143 IPR036426 -
Cca10g01034 809 SMART serkin_6 497 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01034 809 Pfam Protein tyrosine and serine/threonine kinase 499 704 IPR001245 GO:0004672|GO:0006468
Cca10g01034 809 SMART ntp_6 335 414 IPR003609 -
Cca10g01034 809 PIRSF SRK 1 809 IPR024171 GO:0004674
Cca10g01034 809 Pfam D-mannose binding lectin 71 172 IPR001480 -
Cca10g01034 809 CDD PAN_AP_plant 330 415 - -
Cca10g01034 809 CDD B_lectin 30 146 IPR001480 -
Cca10g01034 809 Pfam S-locus glycoprotein domain 204 312 IPR000858 GO:0048544
Cca10g01034 809 Gene3D Hepatocyte Growth Factor 331 412 - -
Cca10g01034 809 MobiDBLite consensus disorder prediction 783 809 - -
Cca10g01034 809 Gene3D Phosphorylase Kinase; domain 1 470 572 - -
Cca10g01034 809 SMART blect_4 29 146 IPR001480 -
Cca10g01034 809 Gene3D Transferase(Phosphotransferase) domain 1 574 773 - -
Cca10g01034 809 ProSiteProfiles PAN/Apple domain profile. 334 415 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01034 Cca-Chr10 12641196 12644863 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01034 422 784 Receptor kinase-like Gene Family AT4G23190 51.220 4.96e-125 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01034 PK_Tyr_Ser-Thr 1.4e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01034 - - ccaj:109805721 1657.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01034 10 12641196 12644863 Cca10g01034 10 12641196 12644863 ECH
Cca04g01345 04 17360250 17363979 Cca10g01034 10 12641196 12644863 PCT