Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01032 ATGGAAGGATTTACCTTGCTTCTGTTCTTCCTTGCCTTGCTGAGTAATGTAGCAGCTGCCACTGTGAGAGAAGCTATTAATACAGTGCAACCTATCAGTGATGGCCAGATCTTAGTTTCAGCTGGAGAAACCTTTGCACTTGGATTCTTCAGTCCAGGCAATTCCAAGAACCGTTATGTTGGCATTTGGTATAATAAGATCCCTACACAGACAGTAGTATGGGTTGCCAACAGAAACAACCCTCTCAATGATTCATCAGGGGTTTTGAAGCTCAATGAAACTGGAGTTCTAGTCCTTCTCAACCAAAACAAGAGTGTCATCTGGTCTTCCAACACAACAAGGTCAGCACAGTATCCAGTTGCAAAGCTTTTGGATTCTGGAAATCTCATTGTGCAGGATGGTAAAGATTTACTGTGGCAAAGTTTTGATTATCCAGTGGACACAATCTTGCCAGGACAGAAGTTTGGAAGAAATTTAATCACGGGCTTGAACCGTTACATGTCATCATGGAATAGCTCTGATGATCCATCTCAAGGTAAATATAGATATCAAATTGATATTAGTGGATATCCACAAATTGTTTTAAGAGAAGGCAGTGTCAAAAGGTACCGTTTTGGATCATGGAATGGTGTTCAGTTTAGTGGGGTACCTCAATTGAAACAAAATGATGTTACTAGATTTAGTTTTATTTCTGATGGGGAAGAGTTGTATTTCAGATTTGAGCATAGCATGAGGTCAGTTATTCATAGAATGGTGTTAACAACAGATGGATATATCAAGGGTAGTTATTGGAATAATGAAGAAAATAAATGGAGCTTGCATGCACAACTTCCTGTGGATGACTGTGATAACTATGACAAATGTGGAGCCAATGCTATCTGTAATATAACCAACATCCCTCCATGTAGTTGCTTGGATGGATTTGTTCCCAGAACTAAAGATATTTATAGTAGTTGTGTGAGGAGAACTTCACTGAGTTGTCATGGAGATGGGTTTGTGAAATTTTCAGGGTTGAAATTACCAGACACAGAGAGATCCTGGTTTAATAGAAACATTAGCCTTGAGGATTGCAGGATATTGTGCACGAAGAATTGCTCATGTACAGCGTATGCAGCCTTGGATGTGAGTAAAGGGCCAAGTGGGTGTTTACTTTGGTTCAATGATCTGTTTGACATGAGAGAATTGACTGAAGTTGATGAAGATATATACATAAGGATGGCTAGGACAGAAATAGAAGCTATTGAAAGAAAGCAGCCACACAAATCAAACATCCTGAAACAAGAAATTGTTTTCATAAGTTGTGTATTGTTTATTGGAATTTTAATCCTATTCTTAACCTTCAGGATTTATAGAAGGTGGAAGACACAGCAGAAAGGCAGAAAGATGAAATTGAAAGGTGATCAAGAAAAAGATGAAAATGTAATAAATGAGGACGAAAAGGAAGATCTAGAGTTACCCATGTTTGAGTTGTCTACAATTATATCTGCAACCAATAACTTTTCAGCTGACAACAAACTAGGGGAAGGTGGTTTTGGATCAGTTTATAAGGGCATCCTGGACGATGGAGGAGAAATAGCTGTCAAGAGGCTCTCAAAGAATTCAAGACAGGGTCTTCAAGAGTTCAGAAATGAAGTTATGCATATTGCAAAACTTCAGCACAGGAATTTAGTGAGGCTACTAGGGTACTGCATTCAAGCAGGAGAAGGATTGCTTGTTTATGAATTTATGCCCAACAAAAGCTTGGATTCCTTCATATTTGATGAAAAGAAGAGCATGTTACTAGATTTGCCGAGGCGCTTGCTCATTATCAATGGAATTGCTCGTGGTCTTCTTTATCTTCATCAAGATTCAAGGCATAGAATAGTTCATAGAGATCTCAAAGCCGGGAATGTTTTGTTAGACAGTGAAATGAACCCGAAAATCTCAGACTTCGGACTAGCTAGAAGCTTTGGAGGAAATGAAATTGAAGCAACCACAAAGCATGTAGTTGGAACCTATGGCTATCTGCCGCCAGAGTATATAATCGATGGAGCTTATTCAACAAAGTCAGATGTTTTCAGCTTTGGTGTGTTGATATTGGAGATAATGAGTGGGAAGAGAAATAAGGGATTCTGTCATCAAGATAATCTTCTGGCACATGCATGGAAACTATTTACTGAAGGAAATTGCTATGGAATAGTTGATTCAACAATAAGAGACTCACTCAATTTAACTGCAGCTCTAAGATCAATTCATGTGGCACTACTTTGTGTGCAACTAAGCCCTGATGACAGGCCAAACATGTCATCTGTGGTTCTGATGCTGAGCAGTGAATCTGCACTGCCACAGCCAAACTTGCCTGGATTCTTTACAAGTACAAATCTGGTTGGTGACAGTTCTTCATCAAACAGTTATAAACAATACACAAACAATGACATGTCAGTTAGCATAATGTCTGCTAGATAG 2445 0.3894 MEGFTLLLFFLALLSNVAAATVREAINTVQPISDGQILVSAGETFALGFFSPGNSKNRYVGIWYNKIPTQTVVWVANRNNPLNDSSGVLKLNETGVLVLLNQNKSVIWSSNTTRSAQYPVAKLLDSGNLIVQDGKDLLWQSFDYPVDTILPGQKFGRNLITGLNRYMSSWNSSDDPSQGKYRYQIDISGYPQIVLREGSVKRYRFGSWNGVQFSGVPQLKQNDVTRFSFISDGEELYFRFEHSMRSVIHRMVLTTDGYIKGSYWNNEENKWSLHAQLPVDDCDNYDKCGANAICNITNIPPCSCLDGFVPRTKDIYSSCVRRTSLSCHGDGFVKFSGLKLPDTERSWFNRNISLEDCRILCTKNCSCTAYAALDVSKGPSGCLLWFNDLFDMRELTEVDEDIYIRMARTEIEAIERKQPHKSNILKQEIVFISCVLFIGILILFLTFRIYRRWKTQQKGRKMKLKGDQEKDENVINEDEKEDLELPMFELSTIISATNNFSADNKLGEGGFGSVYKGILDDGGEIAVKRLSKNSRQGLQEFRNEVMHIAKLQHRNLVRLLGYCIQAGEGLLVYEFMPNKSLDSFIFDEKKSMLLDLPRRLLIINGIARGLLYLHQDSRHRIVHRDLKAGNVLLDSEMNPKISDFGLARSFGGNEIEATTKHVVGTYGYLPPEYIIDGAYSTKSDVFSFGVLILEIMSGKRNKGFCHQDNLLAHAWKLFTEGNCYGIVDSTIRDSLNLTAALRSIHVALLCVQLSPDDRPNMSSVVLMLSSESALPQPNLPGFFTSTNLVGDSSSSNSYKQYTNNDMSVSIMSAR 814
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01032 814 ProSiteProfiles PAN/Apple domain profile. 327 407 IPR003609 -
Cca10g01032 814 SUPERFAMILY Protein kinase-like (PK-like) 483 782 IPR011009 -
Cca10g01032 814 Pfam PAN-like domain 327 392 IPR003609 -
Cca10g01032 814 Gene3D Phosphorylase Kinase; domain 1 459 575 - -
Cca10g01032 814 PANTHER S-LOCUS GLYCOPROTEIN DOMAIN, PAN/APPLE DOMAIN PROTEIN-RELATED 11 810 - -
Cca10g01032 814 CDD PAN_AP_plant 323 407 - -
Cca10g01032 814 Pfam Protein tyrosine and serine/threonine kinase 502 766 IPR001245 GO:0004672|GO:0006468
Cca10g01032 814 SUPERFAMILY alpha-D-mannose-specific plant lectins 72 176 IPR036426 -
Cca10g01032 814 ProSitePatterns Serine/Threonine protein kinases active-site signature. 621 633 IPR008271 GO:0004672|GO:0006468
Cca10g01032 814 CDD B_lectin 29 145 IPR001480 -
Cca10g01032 814 SMART serkin_6 500 768 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01032 814 Gene3D - 18 142 IPR036426 -
Cca10g01032 814 Gene3D Transferase(Phosphotransferase) domain 1 576 776 - -
Cca10g01032 814 Pfam D-mannose binding lectin 71 170 IPR001480 -
Cca10g01032 814 Gene3D Hepatocyte Growth Factor 325 404 - -
Cca10g01032 814 SMART blect_4 29 145 IPR001480 -
Cca10g01032 814 ProSiteProfiles Bulb-type lectin domain profile. 23 144 IPR001480 -
Cca10g01032 814 Pfam S-locus glycoprotein domain 203 311 IPR000858 GO:0048544
Cca10g01032 814 ProSiteProfiles Protein kinase domain profile. 500 779 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01032 814 PANTHER - 11 810 - -
Cca10g01032 814 ProSitePatterns Protein kinases ATP-binding region signature. 506 528 IPR017441 GO:0005524
Cca10g01032 814 SMART ntp_6 327 406 IPR003609 -
Cca10g01032 814 PIRSF SRK 2 814 IPR024171 GO:0004674
Cca10g01032 814 Pfam Domain of unknown function (DUF3403) 769 814 IPR021820 GO:0004674
Cca10g01032 814 CDD STKc_IRAK 506 768 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01032 Cca-Chr10 12625636 12630191 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01032 429 798 Receptor kinase-like Gene Family AT4G23190 49.081 3.07e-114 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01032 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01032 - - gmx:100795006 1354.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01032 10 12625636 12630191 Cca10g01032 10 12625636 12630191 ECH