Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01030 ATGAAGGCAGTAGCAATAATCATCATCGTTGCCTCAGTTCTTACAATCATTCTGGCTTTGTACGTTGTTGGCAAGAGAATCAAAAAGTTGAGAGCTTATGAAACAGAGAACAAGTTGACGGTAGAGAGAAATGAAGAAGACAAGAAAGAAGACCTTGAGCTTCCTTTCTTTCACCGTGATGAAATTATCAAAGCAACTGATGGCTTCTCAATTAACAATAAGCTTGGAGAAGGTGGATTTGGGGCTGTATACATGGGTACCCTAGCAGATGGACAAGAAattgctgttaagaggctctcacaaagttctggacaagggtttaatgagtttaagaatgaagtcatattgattgccaaacttcagcatcgaaatctagttaagcttgttggatgttgcattgaaggagaggagaagatgcttatctatgaatacatgcccaacAAAAGCCTAGACTCCATTATCTTTGATCATGCAAAAGGAAAAATTTTAGATTGGTCTAAGCGCTTCAACATTATTGGTGGAATTGCACGAGGACTTCTATATCTTCATCAAGATTCTAGGTTGAGAATAATACATAGAGACCTTAAAGCCAGTAATGTTCTACTTGACCACGAGTTCAACCCAAAAATATCAGATTTTGGCATGGCCAAAACTTTTGGAGGAGATGAGATTGAAGGAAACACAAGAAGGGTAGTTGGAACATATGGTTACATGGCACCTGAATATGCCATTTATGGACTATTCTCAGTAAAATCTGATGTCTTCAGCTTCGGTGTATTAATGCTGGAGATAATAAGTGGAAAGAAAAACAGAGGATTTTCCCATTCAAATAACAGTATAAACCTTATTGATCATGCATGGAGATTTTGGAAAGAAAACAGACCTTTGGACTTGATTGATTCATGCATGGAGAATTCATCTGTTCTATCAGAAGCATTGCGTTGTATCCATATCGGTCTTCTGTGTGTCCAACAGCATCCTGAGGATAGGCCAAGTATGTCAACTGTGGTAGTGATGTTGAGCAGTGAGAGTGCCTTGCCTCAACCTAAGGAACCTGCTTTTCTTATGGAGAAGGGGAAAGCCTCGGTAATATATTACAAAGATAGGATCGGGTATCCATATGAAGAAGTGGCCGATGATGGCTCAACCTTGGTTTCAATGGATGGAACCTTCGAGTTGGGTTTCTTCAGCCTAGGTCTTTCACCAAACCGCTATGTCGGAATATGGTACAAAAACATCCCAGTTAGAACCGTGGTTTGGGTTGCCAACCGTGACACCCCAATCCAATCCAACTCTAGCAAGTTGAGCATAAACAAAGATGGCAACCTTGTCCTTCTAAGCCACAACAACACCATTGTTTGGTCAACAAAAACGTCAACAAAGACCCTGAGTCCCATTGTGCAACTCTTAGGCACTGGCAACTTGGTACTAAGAGATGAGAGTGACAGCAATCCTATGAACTACTTGTGGCAAAGCTTTGATCACCCTTCAGACACATTGTTGCCAGGAATGAAGCTTGGATGGAACCTAAAGAGTGGTTTTAGTACACGTGTGTCCGCATGGAAGAATTGGGATGACCCTTCAACCGGGGATTTCACTTGGCGTGTGGAACTTGAAGGGTACCCTCAAATGATGATGTGGAAAGGCACAGCAGAATACTACCGTGGTGGACCCTGGAATGGCCTTGGATTCAGTAGTGCCCCTGAACTTGAAATGGATCCACCTTATGTGGTTAACTTTGTGTCGAACAATGATGAGGTGTACTACACATACAACCTCAAGAACAAGTCGTCAATATCAAGGGTTGTTATGAACCAAACGGTTTATGCTCGGCAACGCTACATTTGGATTGAGGAGGCACAAAGTTGGAGGCTTTACACTTCTGTGCCTAGAGAACAGTGTGACTATTACAAGCATTGTGGCTCCTATGGGAAGTGTGACATGGATGAGTTCCCTACGTGCAAGTGCTTGCTCGGATTCAGGCCAAAGTCACCCCAGGAATGGGACACAATGGATTGGAGTAAGGGGTGTGTGCAAAGCCAATCTTGGAAATGCAGGGAGAAGAATAAAGATGGGTTTCTCAAGTTTAGTAGCTTGAAGTTGCCTGACACTAAGAGAACTTGGGTTAATGCAAGTATGAGGCTTGAGGAATGCAAGGCTAAGTGCTGGGGAAATTGTGCATGTAAGGCTTATGCAAACTTAGACATCCGAGGTGGAGGAAGTGGATGTGTCATTTGGTTTGGTGATCTGCTTGATTTGAAATATGTTCCAGATGTTGGGCAGGATTTGTATGTTAGATTGGCTATCACTGAAATAGCAAATCATGACCAAAAAGATGAATTCAGAGAAAGGAAGGCTGTCATCACAAGTACCATTCCATTGATCATAATGATAATTTTTTTAACTATAAGTTACTTTCACTGGAGGAGCAGAAGAAAAATTAGAGAGTGCACCTCGACTAAAGAAAAGAATGATGATGGCCAAGAAGATTTGGAACTACCTTCCTTTGGCTTTGCTTTAATAGCTCGTGCCACTGATAACTTCTCAAATGATAAGAAACTTGGTGAAGGAGGTTTTGGACCTGTATACAGAGGCATGTTACCAAATGGACAAGAGATAGCTGTCAAGAGGCTCTCACAAAGATCTTGTCAAGGATTAAAAGAATTGAAGAATGAAGTTATATTCTGTGGCAAACTTCAACACCGAAATGTTGTTAAGGTCCTTGGTTGTTGCATTCATGGAGAGGAAAGATTGCTCATATATGAATTTATGCCCAAGAGAAGTTTGGATTCTTTTCTCTTTGATTCTAGCAAGGGTAAATTTCTAAATTGGTCTAGACGCTTTCAAATCATAAGTGGAATTGCTCGAGGAATTCTCTATCTTCATCAAGATTCAAGATTGAGAATTATACATAGAGATCTTAAATCAAGTAATATTTTATTAGATAATGAGTTAAACCCAAAGATATCAGATTTTGGCCTAGCTCAAATATGTGGTGATGGTGAAATTGAAGGGAACACGAGTAGAATAGTTGGAACTCATGGTTATATGGCTCCTGAATATGCCATCCATGGACTATTCTCGACCAAATCTGATGTATTTAGCTTTGGTATCTTATTATTGGAGATAGTAAGTGGAAAGAAAAATCAAGGAATTCTCTACCCATATCGCGATTTTAGTCTTATAGGACATGCATGGAGATTGTGGAGGGAGGGCATACCAATGGAATTTATAGATGATTGCTTAAAGGAATCATGCACTGAATCAGAAGCCATACGTTGTATTCACATTGGTCTTTTATGTGTCCAACATTATCCCTATGATAGACCTGACATAACATCTGTGGTTATGATGTTGAGTAATAATGAGAATGCCCTGCCTTGTCCAAAGGAGCCTGGATTTTTATTAGAGAAGTTCTCAACTGAAAGAGTTTCTTCTTTTGGTCCACAATCTTCTTCAATCAACGAGACAAGTATCTCGATGCTTGAGCCTAGATGA 3498 0.3868 MKAVAIIIIVASVLTIILALYVVGKRIKKLRAYETENKLTVERNEEDKKEDLELPFFHRDEIIKATDGFSINNKLGEGGFGAVYMGTLADGQEIAVKRLSQSSGQGFNEFKNEVILIAKLQHRNLVKLVGCCIEGEEKMLIYEYMPNKSLDSIIFDHAKGKILDWSKRFNIIGGIARGLLYLHQDSRLRIIHRDLKASNVLLDHEFNPKISDFGMAKTFGGDEIEGNTRRVVGTYGYMAPEYAIYGLFSVKSDVFSFGVLMLEIISGKKNRGFSHSNNSINLIDHAWRFWKENRPLDLIDSCMENSSVLSEALRCIHIGLLCVQQHPEDRPSMSTVVVMLSSESALPQPKEPAFLMEKGKASVIYYKDRIGYPYEEVADDGSTLVSMDGTFELGFFSLGLSPNRYVGIWYKNIPVRTVVWVANRDTPIQSNSSKLSINKDGNLVLLSHNNTIVWSTKTSTKTLSPIVQLLGTGNLVLRDESDSNPMNYLWQSFDHPSDTLLPGMKLGWNLKSGFSTRVSAWKNWDDPSTGDFTWRVELEGYPQMMMWKGTAEYYRGGPWNGLGFSSAPELEMDPPYVVNFVSNNDEVYYTYNLKNKSSISRVVMNQTVYARQRYIWIEEAQSWRLYTSVPREQCDYYKHCGSYGKCDMDEFPTCKCLLGFRPKSPQEWDTMDWSKGCVQSQSWKCREKNKDGFLKFSSLKLPDTKRTWVNASMRLEECKAKCWGNCACKAYANLDIRGGGSGCVIWFGDLLDLKYVPDVGQDLYVRLAITEIANHDQKDEFRERKAVITSTIPLIIMIIFLTISYFHWRSRRKIRECTSTKEKNDDGQEDLELPSFGFALIARATDNFSNDKKLGEGGFGPVYRGMLPNGQEIAVKRLSQRSCQGLKELKNEVIFCGKLQHRNVVKVLGCCIHGEERLLIYEFMPKRSLDSFLFDSSKGKFLNWSRRFQIISGIARGILYLHQDSRLRIIHRDLKSSNILLDNELNPKISDFGLAQICGDGEIEGNTSRIVGTHGYMAPEYAIHGLFSTKSDVFSFGILLLEIVSGKKNQGILYPYRDFSLIGHAWRLWREGIPMEFIDDCLKESCTESEAIRCIHIGLLCVQHYPYDRPDITSVVMMLSNNENALPCPKEPGFLLEKFSTERVSSFGPQSSSINETSISMLEPR 1165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01030 1165 Pfam Protein tyrosine and serine/threonine kinase 850 1083 IPR001245 GO:0004672|GO:0006468
Cca10g01030 1165 Pfam Protein tyrosine and serine/threonine kinase 70 339 IPR001245 GO:0004672|GO:0006468
Cca10g01030 1165 Gene3D - 373 493 IPR036426 -
Cca10g01030 1165 ProSiteProfiles Bulb-type lectin domain profile. 369 490 IPR001480 -
Cca10g01030 1165 SMART serkin_6 848 1095 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01030 1165 SMART serkin_6 69 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01030 1165 MobiDBLite consensus disorder prediction 1145 1165 - -
Cca10g01030 1165 ProSiteProfiles Protein kinase domain profile. 848 1126 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01030 1165 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 376 1158 - -
Cca10g01030 1165 CDD PAN_AP_plant 686 768 - -
Cca10g01030 1165 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 6 362 - -
Cca10g01030 1165 SMART ntp_6 688 767 IPR003609 -
Cca10g01030 1165 SUPERFAMILY Protein kinase-like (PK-like) 53 340 IPR011009 -
Cca10g01030 1165 Gene3D Phosphorylase Kinase; domain 1 42 144 - -
Cca10g01030 1165 Gene3D Phosphorylase Kinase; domain 1 821 923 - -
Cca10g01030 1165 SMART blect_4 375 496 IPR001480 -
Cca10g01030 1165 SUPERFAMILY alpha-D-mannose-specific plant lectins 418 527 IPR036426 -
Cca10g01030 1165 Pfam S-locus glycoprotein domain 554 664 IPR000858 GO:0048544
Cca10g01030 1165 Pfam PAN-like domain 685 753 IPR003609 -
Cca10g01030 1165 Pfam D-mannose binding lectin 417 522 IPR001480 -
Cca10g01030 1165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 969 981 IPR008271 GO:0004672|GO:0006468
Cca10g01030 1165 CDD B_lectin 380 496 IPR001480 -
Cca10g01030 1165 CDD STKc_IRAK 75 340 - -
Cca10g01030 1165 ProSiteProfiles Protein kinase domain profile. 69 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01030 1165 ProSiteProfiles PAN/Apple domain profile. 685 768 IPR003609 -
Cca10g01030 1165 SUPERFAMILY Protein kinase-like (PK-like) 832 1152 IPR011009 -
Cca10g01030 1165 Gene3D Transferase(Phosphotransferase) domain 1 145 351 - -
Cca10g01030 1165 Gene3D Transferase(Phosphotransferase) domain 1 924 1127 - -
Cca10g01030 1165 ProSitePatterns Protein kinases ATP-binding region signature. 75 97 IPR017441 GO:0005524
Cca10g01030 1165 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 6 362 - -
Cca10g01030 1165 ProSitePatterns Serine/Threonine protein kinases active-site signature. 190 202 IPR008271 GO:0004672|GO:0006468
Cca10g01030 1165 PANTHER CYSTEINE-RICH RLK (RECEPTOR-LIKE KINASE) PROTEIN 376 1158 - -
Cca10g01030 1165 CDD STKc_IRAK 854 1119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01030 Cca-Chr10 12590178 12603429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01030 3 357 Receptor kinase-like Gene Family AT4G23230 54.775 6.69e-126 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01030 PK_Tyr_Ser-Thr 7.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01030 - - pper:18781230 1414.82
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01030 10 12590178 12603429 Cca10g01030 10 12590178 12603429 ECH
Cca10g01030 10 12590178 12603429 Cca04g01302 04 16353063 16356956 PCT