Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01029 ATGAGACAAGCTGGTGCATATTCAGGGTTACTGTGTGGTGGGATATCAGGAAGGACAGGGCCTCACTCTCTGCCCTTGGCAAGGATCAAGAAGATCATGAAGAAGTCTGGTGAAGATGTTAAAATGATATCAGGGGAGGCTCCCATTATTTTCTCCAAGGCTTGTGAGCTCTTCATTCAGGAGCTTACTACAAGGTCCTGGATCATGGCTATCCAAGGCAAAAGGAGAACTTTGCACAAAGAGGACTTGGCCTCCGCAGTTATAGCCACTGACATCTTTGACTTTTTGATCACTTTGGTTTCCAATTCTGAGAACAGCCATGCAATTGGTGCCACCACCAGTACTGTCATGGAAGTGGAAAGTCCAAAACCACTTTCTCCAAACTTAGTTTTGCTTAAAAAGTTATCAGTGGCACTAGCTATGCTAGATAGGTCAAACAATGAAAGTTCAGGAGCTTCTTCTTGTTCTTCATTGTAA 477 0.4382 MRQAGAYSGLLCGGISGRTGPHSLPLARIKKIMKKSGEDVKMISGEAPIIFSKACELFIQELTTRSWIMAIQGKRRTLHKEDLASAVIATDIFDFLITLVSNSENSHAIGATTSTVMEVESPKPLSPNLVLLKKLSVALAMLDRSNNESSGASSCSSL 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01029 158 SUPERFAMILY Histone-fold 16 96 IPR009072 GO:0046982
Cca10g01029 158 Gene3D Histone, subunit A 15 102 IPR009072 GO:0046982
Cca10g01029 158 PANTHER HAP5 SUBUNIT OF HAP COMPLEX 1 107 - -
Cca10g01029 158 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 23 87 IPR003958 -
Cca10g01029 158 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01029 Cca-Chr10 12577992 12580009 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01029 22 104 CCAAT-HAP5 Transcription Factor Family AT3G48590 66.265 6.56e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Cca10g01029 CBFD_NFYB_HMF 4.4e-18 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01029 - - ccaj:109817175 237.269