Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01028 ATGTCTTTTATGAGAATCATTTTCCTTTGTTATCATACACTTGTCTGTCTTTCTAAAATTTCCTTGGCAGTTGAGTCCATTTCTCAAGACCTGTCCCTAAGTGATGATGGCAATGACACCACCTTAGTCTCCAAAGATGGAACCTTTGAACTTGGATTCTTCACCCCAGGAAACTCCCAGAAACGTTACCTGGGGATTTGGTACAGGAAAATCCCTATTCAGACTGTGGTTTGGGTTGCAAACAGGCTCAATCCAATCAATGATTCATCTGGCATCTTGAGAATGAACACCACCACTGGGAGCCTTGTCTTAACACAGAATAATACTGTTGTTTGGTCTACAACCTCTTTGAGAAAGCCAGAGAATCCAGTGGCCATTCTATTAGATTCTGGCAATCTTGTGGTAAGAGATGAGAGAGATTCAAACCCTGAGGCCTACTTGTGGCAGAGTTTTGACTACCCAACTGACACCTTCTTACCTGACATGAAGTTTGGTTGGAACTTGAGAACTGGTTTAAATAGGAACATAACTGCATGGAAGAGTCCTGATGATCCATCTCCTAGTGACTTCTCTTTTGGTATGGTGTTGCATAACTATCCTGAGGCCTATATGATGAAGGGGGACCAAAAGTTCTACCGAAGTGGACCATGGAATGGCTTGCATTCAAGTGGTTCACCACAAGTAAGGGCCAACCCCATTTATGACTTCAAGTTTGTTTTCAACAAGGATGAAGTTTACTACACATACAATCTTAAGAACTCGTCTATGATCTCAAGGCTGGTGTTGAATGGAACAAGCTACGTTCGTAGGCGTTATGTGTGGATTGAATCAAAGAAAAGATGGGAGGTCTACACATCAGTGCCATTGGACTTGTGTGACAGCTATGCCCTTTGTGGAGCTAATGCAAATTGTGTTATTTCAGATTCACCAATTTGCCAATGCTTGAAAGGGTTCAATCCCAAGTCACCTCAGTCATGGAACTCAATGGATTGGTCTCATGGATGTGTCCGAAATAAGGAATTAAGCTGTGAGGATAAGCACAAAGATGGATTTATCAAATTAACTGAGCTGAAAACACCTGACACTACACATACTTGGCTGGATCAGACAATTGGGTTAGAGGAATGCAGAGCTAAGTGCTTGGATAACTGTTCTTGTATGGCTTATGCGAATTCTGATATCAGTGGAGAAGGAATTGGCTGTGCCATGTGGTTTGGTGATCTAATTGATATTAGACAGTTTGCAGCAGGAGGGCAGGACCTATATGTTCGAATGGATGCTTCAGAGTTAGAACATGCCATTGAGGGTCACAAGAAGGGGGGAATCATAGTGGCAGTGATGGTTTCTTTGGCTGTGGCAGTGGTTTCTGGCATACTAATATTACTTGGCTGGTGTTATAGAAAGAAATCACGCACTATTGTAAAAGAGAGATTAGACTTCAGTATCAAAGCAGATAAAAACAGTGGAATGCAAGTGGACGATATGGATCTACCAGTCTTTGACTTGTCAACAATAGCTAAAGCCACTAGCAACTTTACAACCAAGAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATATAGGTTCTATAATTTAAATTTTCTGGGAATTCTAGCAGATGGGCTGGAAATTGCTGTGAAGAGGCTTTCAACAAGCTCAGGACAAGGATTGACTGAATTCAAGAATGAAGTAAAATTGATTGCAAAACTTCAACACCGTAATCTTGTAAAGCTTCTTGGATGTTGCCTTGAAGGAGAGGAACAAATGTTGGTCTATGAATACATGCTTAATGGTAGCCTGGACTCATTTATTTTTGATGAACAAAGAAGAGAATCACTAGACTGGTCAAAGCGCTACAATATTATATGTGGAATCGCCAAGGGCCTTCTTTATCTTCATCAGGATTCTAGACTAAGGATCATTCATAGAGATCTCAAAGCAAGTAATGTTTTACTTGATAGTGAGTTGAATCCCAAAATTTCAGATTTTGGCTTGGCTAGAATTTTTGGTGGAGATCAGAAAGAAGGAAACACAAAGAGAATAGTAGGGACTTATGGTTACATGGCACCTGAATATGCAACTGATGGACTATTTTCGGTGAAATCTGATGTTTTCAGCTTTGGAGTTTTATTGATGGAGATTATATCTGGGAAGAGAAGTAGAGGATATTATAATCAGAACCACATCCATAATCTCATAGGCTATGCATGGAAACTATGGAAAGAAGGAAGAACACTAGAACTGATTGATAAAAGCATAGAACACTCTAGTTTTCTATCACAAATGTTGCATTGCATTCATGTGAGTCTCTTGTGTGTTCAACAGCATCCAGAGGATAGACCTGGAATGTCTTGTGTGCTTCTAATGTTAGTGAGTGAGCTTGAATTGCCTGAGCCAAAAGAGCCAGGATTCTTTGGAAAATATTCAGGTGAAGCAGATTCCTCCACAAGTAAGCAGAAACAAGGTTCGACAAATGAAATAACCATTACCTTATTAGAAGCCCGTTGA 2508 0.4031 MSFMRIIFLCYHTLVCLSKISLAVESISQDLSLSDDGNDTTLVSKDGTFELGFFTPGNSQKRYLGIWYRKIPIQTVVWVANRLNPINDSSGILRMNTTTGSLVLTQNNTVVWSTTSLRKPENPVAILLDSGNLVVRDERDSNPEAYLWQSFDYPTDTFLPDMKFGWNLRTGLNRNITAWKSPDDPSPSDFSFGMVLHNYPEAYMMKGDQKFYRSGPWNGLHSSGSPQVRANPIYDFKFVFNKDEVYYTYNLKNSSMISRLVLNGTSYVRRRYVWIESKKRWEVYTSVPLDLCDSYALCGANANCVISDSPICQCLKGFNPKSPQSWNSMDWSHGCVRNKELSCEDKHKDGFIKLTELKTPDTTHTWLDQTIGLEECRAKCLDNCSCMAYANSDISGEGIGCAMWFGDLIDIRQFAAGGQDLYVRMDASELEHAIEGHKKGGIIVAVMVSLAVAVVSGILILLGWCYRKKSRTIVKERLDFSIKADKNSGMQVDDMDLPVFDLSTIAKATSNFTTKNKIGEGGFGPVYRFYNLNFLGILADGLEIAVKRLSTSSGQGLTEFKNEVKLIAKLQHRNLVKLLGCCLEGEEQMLVYEYMLNGSLDSFIFDEQRRESLDWSKRYNIICGIAKGLLYLHQDSRLRIIHRDLKASNVLLDSELNPKISDFGLARIFGGDQKEGNTKRIVGTYGYMAPEYATDGLFSVKSDVFSFGVLLMEIISGKRSRGYYNQNHIHNLIGYAWKLWKEGRTLELIDKSIEHSSFLSQMLHCIHVSLLCVQQHPEDRPGMSCVLLMLVSELELPEPKEPGFFGKYSGEADSSTSKQKQGSTNEITITLLEAR 835
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01028 835 CDD PAN_AP_plant 341 424 - -
Cca10g01028 835 Gene3D - 24 151 IPR036426 -
Cca10g01028 835 ProSiteProfiles Protein kinase domain profile. 512 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01028 835 CDD STKc_IRAK 518 790 - -
Cca10g01028 835 ProSiteProfiles PAN/Apple domain profile. 343 426 IPR003609 -
Cca10g01028 835 SUPERFAMILY Protein kinase-like (PK-like) 494 790 IPR011009 -
Cca10g01028 835 SMART ntp_6 346 425 IPR003609 -
Cca10g01028 835 ProSiteProfiles Bulb-type lectin domain profile. 24 148 IPR001480 -
Cca10g01028 835 PANTHER - 31 832 - -
Cca10g01028 835 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cca10g01028 835 CDD B_lectin 37 154 IPR001480 -
Cca10g01028 835 PIRSF SRK 1 835 IPR024171 GO:0004674
Cca10g01028 835 MobiDBLite consensus disorder prediction 802 835 - -
Cca10g01028 835 Gene3D Transferase(Phosphotransferase) domain 1 595 798 - -
Cca10g01028 835 Gene3D Phosphorylase Kinase; domain 1 477 594 - -
Cca10g01028 835 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 31 832 - -
Cca10g01028 835 Pfam PAN-like domain 343 411 IPR003609 -
Cca10g01028 835 Pfam D-mannose binding lectin 75 180 IPR001480 -
Cca10g01028 835 Pfam Protein tyrosine and serine/threonine kinase 513 786 IPR001245 GO:0004672|GO:0006468
Cca10g01028 835 SMART blect_4 33 154 IPR001480 -
Cca10g01028 835 ProSiteProfiles EGF-like domain profile. 288 324 IPR000742 -
Cca10g01028 835 Pfam S-locus glycoprotein domain 212 322 IPR000858 GO:0048544
Cca10g01028 835 MobiDBLite consensus disorder prediction 810 835 - -
Cca10g01028 835 SMART serkin_6 512 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g01028 835 Pfam Domain of unknown function (DUF3403) 793 835 IPR021820 GO:0004674
Cca10g01028 835 SUPERFAMILY alpha-D-mannose-specific plant lectins 76 185 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01028 Cca-Chr10 12561318 12564958 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01028 440 807 Receptor kinase-like Gene Family AT4G23190 50.269 6.06e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca10g01028 PK_Tyr_Ser-Thr 2.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01028 - - gmx:100778155 1481.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01028 10 12561318 12564958 Cca10g01028 10 12561318 12564958 ECH
Cca10g01028 10 12561318 12564958 Cca04g01300 04 16281190 16285201 PCT