Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01025 ATGGGAGATGATGAGTTTCAGGCAAGTGGGAATTGGTGGGACACAGCAAGAAACGTGAGCGGGGCATCACAGTCATCTTCCTCTCCCATCACCAACTTTGGTTGGCAACCTTCAGATATGGCTGCCATGAAGCCAAGGTCTTCCATGGATTCTTCTTCTGTGGTTTTCCATGAATCACAGAATAAGCTTCGGCCACCAGATTCTGCCACTTCCACTGACCCCAACTTGCACATGATGGCTCTAGGCCTTTCATCCCAAGCCATGGATTGGAATCAAGCATCTTTGTTGCGAGGAGATCAAAAGGGTCCCGAGAACAGTTTCAGGTCGATGTTGCAAGAGAATTTGGGCTCATCAAGAGCCAATTTTCAGCAAGAAACTGGGATGGGGTTGTCTCAACAAGTTCAATGGAGGTCAGAGAAGATGTTTTCTGTAGAGTCATCAAGCAATGAGTTCAAGCAGGTGAATAGGGGTTTCTCTTTGGATCAAAGCCAGTTTAGTCCTCAATATAGCTCTGGTGACAGCACAGTGACAAGCCAAGGGTTACCCTCTTCTAATTTTCAGATGGATTCCTCAGCCTTATATGGGAACCCTTCAATGTTGCAAGGACTATTGGAACCTGACAATAATAACCAACCTCATCAACAACAACCTTCTATGAGTTTTCCATACCCAACAAGCTATGGATTAAACTCTAATGAGTTGGTCCCTTCTTGGTCCAAAGTTCCTCAATTCTTGAGAGCTTCACCTCCAAAACAACCACTTAATAACCAGTTGCATTTCACTAACAACGCACCCTTTTGGAATGCTTCTGAGCCTGCAAACATCAAAGATGTTCGATCTAATAGTTCCTTCCCCTCCTTGCAACCCCCCTTCTCCACTCCATATTTTGAAGTACAATCAAAGAATATATCTGAAGTTAGGGATTCGGGTACTGTGGTAAAGAAAAGTGGGAATGAGCCAGCACCCAAAAGGACCCGTAACGAAACACCATCTCCTTTGCCAGCTTTTAAGGTGAGAAAAGAAAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTGTCGCCTTTCGGAAAGACTGATACAGCCTCAGTGCTCTCTGAAGCCATCGAATACATCAAACTCCTCCACGAACAGGTCACTACTTTCAGTACTCCGTATATGAAAAGTGGAGCTCCAATACAGACTCAACAGAATTCTGGTAAATCTAAGGAAGCTGAGGGTCCAAAGCAGGATCTTAGAAGCCGAGGGCTGTGCTTGGTGCCGGTTTCGAGTACATTTCCAGTTACTCATGAAACCACATTTGATTTTTGGACACCAACACCAACATACGGAGGAACTTCAAGATAA 1350 0.4489 MGDDEFQASGNWWDTARNVSGASQSSSSPITNFGWQPSDMAAMKPRSSMDSSSVVFHESQNKLRPPDSATSTDPNLHMMALGLSSQAMDWNQASLLRGDQKGPENSFRSMLQENLGSSRANFQQETGMGLSQQVQWRSEKMFSVESSSNEFKQVNRGFSLDQSQFSPQYSSGDSTVTSQGLPSSNFQMDSSALYGNPSMLQGLLEPDNNNQPHQQQPSMSFPYPTSYGLNSNELVPSWSKVPQFLRASPPKQPLNNQLHFTNNAPFWNASEPANIKDVRSNSSFPSLQPPFSTPYFEVQSKNISEVRDSGTVVKKSGNEPAPKRTRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKLLHEQVTTFSTPYMKSGAPIQTQQNSGKSKEAEGPKQDLRSRGLCLVPVSSTFPVTHETTFDFWTPTPTYGGTSR 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01025 449 Gene3D - 337 398 IPR036638 GO:0046983
Cca10g01025 449 MobiDBLite consensus disorder prediction 308 333 - -
Cca10g01025 449 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 29 436 - -
Cca10g01025 449 CDD bHLH_AtbHLH_like 333 380 IPR045239 -
Cca10g01025 449 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 327 376 IPR011598 GO:0046983
Cca10g01025 449 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 337 391 IPR036638 GO:0046983
Cca10g01025 449 MobiDBLite consensus disorder prediction 387 404 - -
Cca10g01025 449 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 29 436 - -
Cca10g01025 449 MobiDBLite consensus disorder prediction 11 35 - -
Cca10g01025 449 MobiDBLite consensus disorder prediction 1 73 - -
Cca10g01025 449 MobiDBLite consensus disorder prediction 163 219 - -
Cca10g01025 449 MobiDBLite consensus disorder prediction 387 413 - -
Cca10g01025 449 MobiDBLite consensus disorder prediction 45 73 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01025 Cca-Chr10 12508345 12513204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01025 97 449 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G20640 45.960 9.83e-74 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01025 - - gmx:100778697 746.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g01025 10 12508345 12513204 Cca10g01025 10 12508345 12513204 ECH