Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g01021 ATGGGAGCAAAGGCAAAGAAAGCTTTGAAGAAGAACATGAAAAGGGCTTCCTCCAGTAAGCCATCTCAAGGTGCAGATTTTTTGCCCTTGGAAGGTGGTCCTGCTCGCAAGCTCCCCGAACAGAAGCCGCTGGAGAATACTGCCACCGTGTTGTACGTCGGTCGGATTCCTCACGGATTCTATGAGAAGGAGATGGAAGGTTATTTTGGGCAATTTGGAACCATCAAGAGATTGAGAATTTCGCGGAATAAAAGGACTGGAAAATCAAGACATTTTGGGTTCATAGAATTTGAATCTCCCGAGGTAGCAAAAATTGTAGCTGATACTATGCACAATTATCTCCTTTTTGAACACCTTCTCCAAGTCTATGTGATACCTCCGGAGCAAGTTCATCCAAGATTATGGCAAGGATTTAATTACCGTTACAAGCCATTGGATACCGTTGAAATTGAACGGAAGCGTCATGACAAGGAAAGAACATTGGAAGAGCAGAAGAAATTGGTGGAGAAGATTCTGAAACATGACAAAAAACGTCGATTAAGGATTGAGGCTGCTGGCATCGATTATGAATGCCCTGAGATTGTGGGTAACATCCAGCCTGCTCCAAAGAAAATAAAGTTTGAAGACTAA 630 0.4302 MGAKAKKALKKNMKRASSSKPSQGADFLPLEGGPARKLPEQKPLENTATVLYVGRIPHGFYEKEMEGYFGQFGTIKRLRISRNKRTGKSRHFGFIEFESPEVAKIVADTMHNYLLFEHLLQVYVIPPEQVHPRLWQGFNYRYKPLDTVEIERKRHDKERTLEEQKKLVEKILKHDKKRRLRIEAAGIDYECPEIVGNIQPAPKKIKFED 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g01021 209 MobiDBLite consensus disorder prediction 1 40 - -
Cca10g01021 209 CDD RRM_NIFK_like 50 122 - -
Cca10g01021 209 PANTHER MKI67 FHA DOMAIN-INTERACTING NUCLEOLAR PHOSPHOPROTEIN 1 208 - -
Cca10g01021 209 PANTHER - 1 208 - -
Cca10g01021 209 SUPERFAMILY RNA-binding domain, RBD 32 138 IPR035979 GO:0003676
Cca10g01021 209 SMART rrm1_1 50 123 IPR000504 GO:0003723
Cca10g01021 209 Gene3D - 3 124 IPR012677 -
Cca10g01021 209 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 51 118 IPR000504 GO:0003723
Cca10g01021 209 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 49 127 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g01021 Cca-Chr10 12371812 12375345 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g01021 49 122 Eukaryotic Initiation Factors Gene Family AT1G71770 33.784 6.20e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g01021 K14838 - gmx:100778780 369.777