Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00999 ATGAAAGAGGAATCAACTGGACTTATCATTGGGATTTCCATAGGTGTTGTGATTGGAATTGGTTTGGCAATTTCTGCATTGTTGTGTCTTAGATATCACCGGAAGCGATCACAGATTGGCAATAGCAGTTCCAGGAGGGCTGCTGCCATACCTATCCGCGAAAATGGCATTGATTCTTGCACTATTCTATCAGACTCAACCTTGGGTCCTGAATCACCTGTAAGGTCTGGGAGAAATGGCATGTCCTTCTGGATTGATGGCTTCAAGAAGAGTAGTAACATGGTTTCAGCATCTGGAATACCAGAGTATTCATACAAGGATTTGCAAAAGGCAACATATAATTTTACAACACTCATAGGACAAGGAGCATTTGGTCCTGTTTATAAAGCTCAGATGTCTACTGGCGAGACAGTTGCAGTTAAAGTTCTTGCAACTAATTCTAAGCAAGGGGAGAAAGAATTTCACACAGAGGTTATTTTGTTGGGAAGGTTACATCATAGGAATCTGGTCAATTTGGTTGGGTATTGTGCAGAAAAAGGGCAACATATGCTTGTATATGTGTACATGAGTAAAGGCAGCTTGGCTTCTCACTTATATAGTGAAGGGAATGGAGCTCTGGGATGGGACTTGAGGGTTCATATAGCTTTAGATGTAGCAAGAGGTATAGAGTATCTTCATGATGGGGCAGTTCCTCCTGTAATCCATCGAGATATCAAATCTTCCAATATTCTCTTGGACCAGTCCATGCGAGCCAGGGTTGCTGATTTTGGACTCTCAAGAGAAGAAATGGTGGATAAACATGCCGCAATTCGGGGTACCTTTGGCTATCTTGATCCTGAGTATATATCTTCCGGGACATTCACCAAGAAAAGTGATGTATACAGTTTTGGGGTGCTGCTATTTGAACTTATAGCAGGCCGAAATCCTCAGCAAGGCCTTATGGAATATGTTGAGCTTGCAGCAATGAACACTGAGGGGAAAGTTGGTTGGGAGGAGATAGTTGATTCCAGGCTTGAGGGAAAATGTGACTTTCAAGAGCTGAATGAAGTGGCAGCCCTTGCTTACAAATGCATCAACCGTTCCCCAAAGAAACGCCCTTCAATGAGGGACATAGTGCAAGTGTTGTCACGGATCCTCAAATCAAGGCACCAAAAGAATCATCATCACAACAAGTCACTCTCAGCCACAGCTGATGAAGTTTCCATTGATGTTGATCAGCTAGAAACCAAGAGTTCTATCACTGATCACCGAAGAGAAGAATCCATAGATAGTGCAGCTGACATGTATGATGTGTAG 1296 0.429 MKEESTGLIIGISIGVVIGIGLAISALLCLRYHRKRSQIGNSSSRRAAAIPIRENGIDSCTILSDSTLGPESPVRSGRNGMSFWIDGFKKSSNMVSASGIPEYSYKDLQKATYNFTTLIGQGAFGPVYKAQMSTGETVAVKVLATNSKQGEKEFHTEVILLGRLHHRNLVNLVGYCAEKGQHMLVYVYMSKGSLASHLYSEGNGALGWDLRVHIALDVARGIEYLHDGAVPPVIHRDIKSSNILLDQSMRARVADFGLSREEMVDKHAAIRGTFGYLDPEYISSGTFTKKSDVYSFGVLLFELIAGRNPQQGLMEYVELAAMNTEGKVGWEEIVDSRLEGKCDFQELNEVAALAYKCINRSPKKRPSMRDIVQVLSRILKSRHQKNHHHNKSLSATADEVSIDVDQLETKSSITDHRREESIDSAADMYDV 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00999 431 SUPERFAMILY Protein kinase-like (PK-like) 102 393 IPR011009 -
Cca10g00999 431 Pfam Protein tyrosine and serine/threonine kinase 115 375 IPR001245 GO:0004672|GO:0006468
Cca10g00999 431 MobiDBLite consensus disorder prediction 411 425 - -
Cca10g00999 431 Coils Coil 390 410 - -
Cca10g00999 431 SMART serkin_6 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00999 431 PANTHER CALCIUM/CALMODULIN-REGULATED RECEPTOR-LIKE KINASE 1 5 405 - -
Cca10g00999 431 Gene3D Transferase(Phosphotransferase) domain 1 189 404 - -
Cca10g00999 431 Gene3D Phosphorylase Kinase; domain 1 84 188 - -
Cca10g00999 431 PANTHER OS01G0253100 PROTEIN 5 405 IPR045271 GO:0004714|GO:0006468
Cca10g00999 431 CDD STKc_IRAK 119 378 - -
Cca10g00999 431 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Cca10g00999 431 ProSiteProfiles Protein kinase domain profile. 113 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00999 431 MobiDBLite consensus disorder prediction 411 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00999 Cca-Chr10 11757577 11762108 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00999 24 375 Glycoside Hydrolase AT3G07070 39.353 7.10e-74 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-2 Cca10g00999 PK_Tyr_Ser-Thr 7.7e-53 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00999 - - gmx:100799586 806.979
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00999 10 11757577 11762108 Cca10g00999 10 11757577 11762108 ECH
Cca10g00999 10 11757577 11762108 Cca04g01282 04 15778740 15792007 PCT