Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00994 ATGCTTGTTGGATTTAGGCCTTGGCGTAATATAAAGCACGTGAAGCCCTTTGGAATGACAATTCAACAATATATGGGTATCATAAAGGTTATCTTTTGCATCATTTTGACTTTTAATATTATGACAGTAGTCAGCATTGAAGAGAAGCAAACTCAAGAAAAATTCATTAGCCAACTATTTGATCCAACATCTGAACTATTAACTGAGGACACGGCAAAGGTACTATGGATCACTTGTTGGGAAGATTTGATACATTTAAAGAAAGAAGTTGGAGGTCTTGATTTATGTCTCCCAAATGAATCATATAGAAGCACCCATGAAGTTGGCTCAATAGCTAGAGAAAACATCCAAAAATTGATTAATACCTGTTATCCTCAGTTAAAGGAAAATGTTCTTCATTGTTTGAGAAGAAATAATTTTCAATTCAATGTTCCTAAGGAAGAAGATGACTCCAAGATTTGGCATGCCACTTACATGGGATCACTTTCTCCTAGAAGATATTTGGGTGCTAAGGATAAACAACAATCTTCTGGTTCTGAGGAAACATCTGGTGCTCCTATGGGTATAATTATACCGGTTGCAGTTTTAGGTGTAGTAGTGATCATCTTTTGTTGTTATCGATTATGTGGGAGTGGTCAAGTTAGTCAAAATGATGAAAGACCCCTTCTCAGCATGAGCATGAGTGACTATTCAGTTGGTTCTTCCAATAACTTGTACAAAAATTCAATGAAAGAGGAGAAATTTGAGTTTCAATTATCAAGTAATGCATTGGTTGATGACAAGAACTCAGTGCCAGAAGTTCAGTCAGCAAGAGTTTCTAGTGCTGCTGCAAGACCATCATTTGACTTGAAACCTCCTCCTGGTAGAGTGGCAAATGGAGTGCTTCCTTTGAAACCACCTCCTGGAAGGCCTGATCTTCTTCCACCTGAGCCACTTTCTATTAAGTCTTGTGATGATTCTGTTGTTCCTCCTCCTCCTCCTCCTccaccaccaccaacgccaccaccaccaccaccaccaAAGCCTCAAAGTGGTGGTCCTCCACCTCCTCCACCTCCTAGTCGTGGTCCTCCACCTCCTCCACCTCCTAGTCGTGGTGGCCCTCGACCTCCTCCACCTCCTGGAAATGGCCCTAGACCTCCTCCTCCTCCTCCACTTAAAGGCAAGCCCGGTGGTCCTCGGCCTCCACCACCTCCCAGAGCTGGTGGAGCTCCTTCAAAAGCTCTTCCCCCATTTGGTCCAAAGGCTCCTAAGACTCAAGGGGAAGTTGGACCCACTTTTGAAGCTGAATCTTATCCTCCTAAAACTAAGCTAAAGCCTTTCTTCTGGGATAAGGTTCAAGCTAACTCAGATCAAACAATGGTCTGGAATCAACTCAAAGCAGGATCATTCCAGTTTAATGAAGAAATGATGGAGACACTTTTTGGCTATACTGCTACAACTAATGATAAAGGCAAAGGCCAACTAAAAAAAGATGTTGCCACCCAAGCAGCTGCACCTCAATATATACAGATCATTGACTCTAAGAAATCACAAAACTTATCTATTCTATTAAAAGCACTAAATGTGACGACAGAAGAAGTTTGTGATGCACTTCTTGAAGGAAATGAGCTCCCCACAGAATTCATTCAATCCATATTGAAGATGGCACCAACGTCAGAGGAAGAACTTAAGCTTAGACTTTTCACTGGTAATCTAGCCCAACTTGGTCCAGCAGATAGGTTCCTAAAGGCCTTAGTTGACATTCCATTTGCTTTCAAACGAATGGAATCACTACTTTACATGGGTACTCTTCATGAAGAACTCACTACTGCTCGAGATTCTTTTGCAATTTTAGAGGTTGCTTGCAAAAAGTTAAGAAGCAGTCGATTGTTCCTCAAACTTCTTGAAGCTGTTCTTAAAACTGGCAATCGTATGAATGATGGGACATTTCGTGGTGGTGCACAAGCATTCAAACTTGATACATTGCTGAAATTATCCGATGTCAAAGGAGTGGACGGCAAGACTACTCTCTTACACTTTGTGGTTCAAGAAATCATGCGCACTGAGGGCATAAGAGCTGCACGCACGGCAAAAGAAAGTCTTAGTTTTTCTAGTGTGAAAACAGAAGACCTTCTTGAGGACGTTTCTATTGAATCAGAAGACCAATATCGTGAACTTGGTCTTCAAGTGCTTTCACGTTTAAGCAGTGAACTTGAGAATGTGAAGAAAGCAGCAGCAATAGATGCTGATGCCTTAATAGGAACAACTTCTAGACTAGGCCATGGTCTCGTAAAAACAAAAGACTTCATAAACAAAGACCTAAGCAACGTACAAGATGATAAAGGTTTTAATGAGACAGTGAAGAGTTTTGTGGAGAAAGCTGAGGGTGATGTCACAAGTTTGCTAGAAGAAGAGAAGAAAATCATGGCTTTAGTGAAGAGCACTGGTGATTACTTTCATGGAGATTCGGGGAAGGATGAAGGGTTGAGATTGTTTGTAATAGTACGTGATTTCTTAATAATGTTGGATAAGGTATGCAGGGAGATAAAAATTCCACCACCAAAGAAACCAGTGGTAAAAAATGTGAAACAAGAAACTTCTAATAATAATTCTAAACGttcttcttcatctgaatctcatctgcctcctcctcctgatattcgtcAAAGAATTTTTCCAGCAGTCGTAAATAGGAGAACAGATGACTTTAGTTCAGATGATGAGAGTCCTTAG 2715 0.393 MLVGFRPWRNIKHVKPFGMTIQQYMGIIKVIFCIILTFNIMTVVSIEEKQTQEKFISQLFDPTSELLTEDTAKVLWITCWEDLIHLKKEVGGLDLCLPNESYRSTHEVGSIARENIQKLINTCYPQLKENVLHCLRRNNFQFNVPKEEDDSKIWHATYMGSLSPRRYLGAKDKQQSSGSEETSGAPMGIIIPVAVLGVVVIIFCCYRLCGSGQVSQNDERPLLSMSMSDYSVGSSNNLYKNSMKEEKFEFQLSSNALVDDKNSVPEVQSARVSSAAARPSFDLKPPPGRVANGVLPLKPPPGRPDLLPPEPLSIKSCDDSVVPPPPPPPPPPTPPPPPPPKPQSGGPPPPPPPSRGPPPPPPPSRGGPRPPPPPGNGPRPPPPPPLKGKPGGPRPPPPPRAGGAPSKALPPFGPKAPKTQGEVGPTFEAESYPPKTKLKPFFWDKVQANSDQTMVWNQLKAGSFQFNEEMMETLFGYTATTNDKGKGQLKKDVATQAAAPQYIQIIDSKKSQNLSILLKALNVTTEEVCDALLEGNELPTEFIQSILKMAPTSEEELKLRLFTGNLAQLGPADRFLKALVDIPFAFKRMESLLYMGTLHEELTTARDSFAILEVACKKLRSSRLFLKLLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGVDGKTTLLHFVVQEIMRTEGIRAARTAKESLSFSSVKTEDLLEDVSIESEDQYRELGLQVLSRLSSELENVKKAAAIDADALIGTTSRLGHGLVKTKDFINKDLSNVQDDKGFNETVKSFVEKAEGDVTSLLEEEKKIMALVKSTGDYFHGDSGKDEGLRLFVIVRDFLIMLDKVCREIKIPPPKKPVVKNVKQETSNNNSKRSSSSESHLPPPPDIRQRIFPAVVNRRTDDFSSDDESP 904
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00994 904 MobiDBLite consensus disorder prediction 269 435 - -
Cca10g00994 904 Pfam Formin Homology 2 Domain 430 836 IPR015425 -
Cca10g00994 904 Gene3D Formin, FH2 domain 434 874 IPR042201 -
Cca10g00994 904 SMART it6_source 428 851 IPR015425 -
Cca10g00994 904 PANTHER FORMIN-RELATED 186 902 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca10g00994 904 PANTHER FORMIN-RELATED 19 164 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cca10g00994 904 MobiDBLite consensus disorder prediction 848 904 - -
Cca10g00994 904 MobiDBLite consensus disorder prediction 855 876 - -
Cca10g00994 904 PRINTS Proline rich extensin signature 324 340 - -
Cca10g00994 904 PRINTS Proline rich extensin signature 350 362 - -
Cca10g00994 904 PRINTS Proline rich extensin signature 362 383 - -
Cca10g00994 904 PANTHER FORMIN-LIKE PROTEIN 19 164 - -
Cca10g00994 904 PANTHER FORMIN-LIKE PROTEIN 186 902 - -
Cca10g00994 904 ProSiteProfiles Formin homology-2 (FH2) domain profile. 428 862 IPR015425 -
Cca10g00994 904 SUPERFAMILY Formin homology 2 domain (FH2 domain) 380 843 - -
Cca10g00994 904 MobiDBLite consensus disorder prediction 320 405 - -
Cca10g00994 904 MobiDBLite consensus disorder prediction 292 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00994 Cca-Chr10 11669961 11676230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00994 412 895 FH2 protein (formin) Gene Family AT5G54650 65.226 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00994 - - gmx:100782988 787.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00994 10 11669961 11676230 Cca10g00994 10 11669961 11676230 ECH
Cca10g00994 10 11669961 11676230 Cca04g01279 04 15732470 15740269 PCT