Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00992 ATGGTGGGAACTCCAATTAACGGAAGAACAAGGCCAGCTTTTGGTGTTGTGAATGGTAGTGGCCATGATCTTGGCCCTAGTAGTACTCCACCAAGCAATGCTGGCTCAGATTATGGCATTATAGAGTTCACAAGAGAGGATGTGGAGGCCTTGCTGAATGAAAAGGCCAAAAGGAAGGACAGATTTAATTACAAGGAAAGATGTGAAAATATGATGGACTATATAAAAAGGCTGAAGGTTTGCATCAGGTGGTTCCAAGACCTTGAGATGAGCTACTCACTAGAGCAAGAAAAGTTGAAGAGTTCATTCGAATTAGCCCAGCAAAAATGCGTGGAAATAGAGTTGCTACTCAAAATCAAGGAAGAAGAGCTAAACTCAATTATTGTGGAAATGAGAAGGAATTGCACTTCTTTACAAGAGAAACTAGTTAAGGAAGAATCAGAAAAAACAGCAGCAACGGAATCTCTTGTCAAAGAGAGAGAGGCTAGACTTAACTTTGAGAGGTCTCAGAATACACTACAGGAGGATCTTGGGAGAGCACAGCGAGAGCTTCAAAGTGCAAATCAGAAGATATCATCCCTCAATGACATGTATAAGCGGTTACAAGATTACATTACAAGCTTACAGCAGTACAATGGAAAACTTCACTCAGAGCTTTCTACAGTTGAGAATGAACTCAAGCGCGTAGAGAAAGAGAAAGCCACTGTTGTGGAGAACCTTACCATGTTAAAGGGCCAGCTTACTTTGTCTATGGCTTCTCAAGAAGAGGCCACAAAACAGAAGGATGCCTTTGCTAGTGAAGTTACATCTCTTCGAATAGAGTTGCAACAAGTGAGGGATGATCGGGACCGGCAATTATTTCAAGCGCAAAATTTAACTTCTGAGTTAGAGAAGTCTAAAGATTCTACAGAAAAGTCCTGCTCTGAACTGAACAACTTGACCACAAGGACAAATGAACTAGAGGCAAAATGTGCTTTGCAAGATGAGAGAATAAAGGTACTACAAGAGCAGCTAACTACTGCAGAGGAGAAACTGCAGGTTTCTGACATATCTGCAAGTGAGACAAGAACAGAGTTTGAAGGGCAACGTAAACTTGTACTTGAGTTGCAAAGACGTTTGGCAGATGCAGAATATAAAGTTATAGAAGGAGAGAAGCTGAGGAAAGAATTACACAATACCATATTGGAATTAAAAGGGAACATCCGCGTGTTCTGTAGAGTGCGGCCTTTGTTACCAGATGAAGCTTGTAGCACAGAAGGAAAGGTCATATCTTATCCCACATCGATGGAAGCTTCTGGAAGGGGCATTGAATTGACACAAAGTGGCCAAAAACATTCTTTCACATTTGATAAAGTTTTTGCACCTGATGCATCACAAGAAGAAGTTTTTATTGAAATTTCACAGCTTGTGCAAAGTGCTCTTGATGGTTATAAGGTTTGCATTTTTGCCTATGGTCAGACAGGGTCAGGTAAAACATATACAATGATGGGCAGGCCTGGACATCCAGAAGAGAAGGGCTTGATTCCTCGTTCACTTGAACAAATATTTCAAACGAAACAGTCTCAGCAACCCCAAGGCTGGAAATATGAAATGCAGGTGTCAATGTTGGAAATATACAACGAAACCATTCGTGATCTTTTATCTACAAATAAGTCATCATCAGATGCAACACCAACACGTGTGGAAAATGGTACTCCTGGGAAGCAATACACAATCAAACATGATGCCAATGGGAATACACATGTTTCTGATCTCACAGTAGTCGATGTTCAGAGTGTAAAAGAGGTTGCATTTCTCTTAAATCAAGCTGCGAACAGCAGATCTGTGGGAAAAACTCAGATGAATGAACAATCTTCAAGAAGTCATTTTGTATTCACTCTTCGAATATATGGTGTGAATGAGAGCACTGACCAACAAGTACAAGGTATTCTAAATCTTATTGATCTTGCTGGGAGTGAGCGTCTTTCAAGGAGTGGATCAACCGGGGACCGATTGAAAGAAACTCAAGCAATAAACAAAAGTCTGTCATCGTTAAGTGATGTTATATTCGCCTTGGCCAAGAAGGAGGATCATATCCCATTCAGGAACTCTAAGCTTACATACTTACTTCAGCCTTGTCTAGGTGGGGACTCAAAGACATTAATGTTTGTAAACATTGCTCCTGACAATGCTTCAACTGGAGAGTCACTATGCTCACTACGGTTTGCATCAAGGGTCAATGCTTGTGAAATTGGGACACCTCGCCGTCACACCAATGGACGCCCTATAGAATCTCGCTTGACCTATTTCTAA 2292 0.411 MVGTPINGRTRPAFGVVNGSGHDLGPSSTPPSNAGSDYGIIEFTREDVEALLNEKAKRKDRFNYKERCENMMDYIKRLKVCIRWFQDLEMSYSLEQEKLKSSFELAQQKCVEIELLLKIKEEELNSIIVEMRRNCTSLQEKLVKEESEKTAATESLVKEREARLNFERSQNTLQEDLGRAQRELQSANQKISSLNDMYKRLQDYITSLQQYNGKLHSELSTVENELKRVEKEKATVVENLTMLKGQLTLSMASQEEATKQKDAFASEVTSLRIELQQVRDDRDRQLFQAQNLTSELEKSKDSTEKSCSELNNLTTRTNELEAKCALQDERIKVLQEQLTTAEEKLQVSDISASETRTEFEGQRKLVLELQRRLADAEYKVIEGEKLRKELHNTILELKGNIRVFCRVRPLLPDEACSTEGKVISYPTSMEASGRGIELTQSGQKHSFTFDKVFAPDASQEEVFIEISQLVQSALDGYKVCIFAYGQTGSGKTYTMMGRPGHPEEKGLIPRSLEQIFQTKQSQQPQGWKYEMQVSMLEIYNETIRDLLSTNKSSSDATPTRVENGTPGKQYTIKHDANGNTHVSDLTVVDVQSVKEVAFLLNQAANSRSVGKTQMNEQSSRSHFVFTLRIYGVNESTDQQVQGILNLIDLAGSERLSRSGSTGDRLKETQAINKSLSSLSDVIFALAKKEDHIPFRNSKLTYLLQPCLGGDSKTLMFVNIAPDNASTGESLCSLRFASRVNACEIGTPRRHTNGRPIESRLTYF 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00992 763 Coils Coil 121 148 - -
Cca10g00992 763 ProSiteProfiles Kinesin motor domain profile. 400 742 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g00992 763 Coils Coil 41 61 - -
Cca10g00992 763 CDD KISc_C_terminal 398 744 - -
Cca10g00992 763 Coils Coil 212 246 - -
Cca10g00992 763 PANTHER KINESIN-LIKE PROTEIN 7 762 - -
Cca10g00992 763 Gene3D Kinesin motor domain 343 744 IPR036961 -
Cca10g00992 763 Coils Coil 317 344 - -
Cca10g00992 763 MobiDBLite consensus disorder prediction 1 33 - -
Cca10g00992 763 PANTHER KINESIN-LIKE PROTEIN KLP-3 7 762 - -
Cca10g00992 763 MobiDBLite consensus disorder prediction 549 568 - -
Cca10g00992 763 Pfam Kinesin motor domain 406 740 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g00992 763 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 362 740 IPR027417 -
Cca10g00992 763 Coils Coil 170 204 - -
Cca10g00992 763 PRINTS Kinesin heavy chain signature 476 497 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g00992 763 PRINTS Kinesin heavy chain signature 612 629 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g00992 763 PRINTS Kinesin heavy chain signature 643 661 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g00992 763 PRINTS Kinesin heavy chain signature 692 713 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca10g00992 763 SMART kinesin_4 398 750 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00992 Cca-Chr10 11651698 11658445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00992 362 754 Calmodulin-binding Proteins AT5G65930 38.071 1.04e-77 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00992 K10405 - gmx:100801196 1393.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00992 10 11651698 11658445 Cca10g00992 10 11651698 11658445 ECH
Cca10g00992 10 11651698 11658445 Cca04g01276 04 15691058 15698077 PCT