Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00989 ATGAGTGAGTGCACACGCATAGGCATAGCCATAGATTCCCCTTTTCCCAGAAACAAGAAAACCCTCTTTTTCTGTGAACCCTCTCCAACGTCAAATCCCAATTCCTCATTCCCACGCGCCATGGTTTCCCCCGAAAACACCAATTGGCTCTTCGATTACCCCTTGATCGACGATATTCCCGTcgccgacgcttccttcgccgcctccgccttcgcctggcccctcccaccgccaccacctTCCAATGTCGGTGTTGAGATTGATGCTTCGCTCGGGGATTCTGATGGCTTCAGAGATCCTGCTCTGAAGAAGAGGGGTAGGTCTGATTCATGTACTGCTTCTAGCTCTAAAGCATGTCGGGAGAAGTTGCGGAGGGATAGGCTTAATGACAAGTTTGTTGAATTGGGCTCCATCTTGGAGCCTGGAAGGCCTCCCAAAACAGACAAGGCTGCCATTCTGATTGACGCCGTCCGAATGGTGACACAGCTGCGGGATGAAGCCCAGAAGTTGAAAGACTCGAATACAGGTCTTCAAGAGAAGATTAAAGAGTTAAAGTCCGAGAAGAATGAACTTCGTGATGAGAAACAGAGGCTCAAGGCAGAGAAGGAGAAGTTGGAGCTGCAGGTAAAATCAATGAATGCCCAGCCTGCTTTCTTGCCACCGCCTCCTGCAATCCCTGCTGCATTTGCTCCACAAGGCCAAGCCCCCGGCAACAAATTGGTGCCATTTATGGGTTATCCGGGTGTTGCCATGTGGCAGTTTATGCCTCCGGCCGCCGTGGATACCTCACAGGATCATGTACTCCGTCCACCAGTTGCCTAA 822 0.4659 MSECTRIGIAIDSPFPRNKKTLFFCEPSPTSNPNSSFPRAMVSPENTNWLFDYPLIDDIPVADASFAASAFAWPLPPPPPSNVGVEIDASLGDSDGFRDPALKKRGRSDSCTASSSKACREKLRRDRLNDKFVELGSILEPGRPPKTDKAAILIDAVRMVTQLRDEAQKLKDSNTGLQEKIKELKSEKNELRDEKQRLKAEKEKLELQVKSMNAQPAFLPPPPAIPAAFAPQGQAPGNKLVPFMGYPGVAMWQFMPPAAVDTSQDHVLRPPVA 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00989 273 MobiDBLite consensus disorder prediction 96 118 - -
Cca10g00989 273 PANTHER BHLH TRANSCRIPTION FACTOR 41 273 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cca10g00989 273 SMART finulus 118 169 IPR011598 GO:0046983
Cca10g00989 273 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 112 163 IPR011598 GO:0046983
Cca10g00989 273 PANTHER BHLH DOMAIN CLASS TRANSCRIPTION FACTOR 41 273 - -
Cca10g00989 273 Gene3D - 115 192 IPR036638 GO:0046983
Cca10g00989 273 CDD bZIP 178 210 - -
Cca10g00989 273 Coils Coil 160 215 - -
Cca10g00989 273 CDD bHLH_AtILR3_like 117 192 - -
Cca10g00989 273 Pfam Helix-loop-helix DNA-binding domain 116 163 IPR011598 GO:0046983
Cca10g00989 273 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 117 187 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00989 Cca-Chr10 11622136 11624611 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00989 41 273 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G54680 67.932 1.38e-110 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00989 HLH 5.9e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00989 - - ccaj:109815088 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00989 10 11622136 11624611 Cca10g00989 10 11622136 11624611 ECH
Cca10g00989 10 11622136 11624611 Cca04g01274 04 15662522 15666439 PCT