Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00985 ATGGGAATGATGCCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCAGAAGAAGACAACAAGCTCGTTGCTTATGTTCAAAAGCATGGCCATGGAAACTGGAATTCAGTGCCTGCCAAAGCGGGTCTTCGAAGATGTGGAAAGAGCTGCAGGCTGAGGTGGATTAACCACCTCAAACCTGATATAAAACGAGGGAACTTTAGCTTCTCAGAAGATCGCACCATTATTCAACTTCATGCTCTTCTTGGAAACAAGTGA 267 0.4569 MGMMPCCEKVGLKKGPWTPEEDNKLVAYVQKHGHGNWNSVPAKAGLRRCGKSCRLRWINHLKPDIKRGNFSFSEDRTIIQLHALLGNK 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00985 88 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Cca10g00985 88 SMART sant 13 63 IPR001005 -
Cca10g00985 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca10g00985 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
Cca10g00985 88 CDD SANT 16 61 IPR001005 -
Cca10g00985 88 PANTHER TRANSCRIPTION FACTOR MYB106 1 88 - -
Cca10g00985 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca10g00985 88 Gene3D - 13 66 - -
Cca10g00985 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00985 Cca-Chr10 11567596 11567954 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00985 1 88 MYB Transcription Factor Family AT4G21440 72.727 1.24e-47 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Cca10g00985 Myb_DNA-binding 1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00985 K09422 - gmx:100785734 176.792