Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00976 ATGGGAATGATGCCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACACCAGAAGAAGACAACAAGCTCGTTGCTTATGTTCAAAAGCATGGCCATGGAAACTGGAATTCAGTGCCTGCCAAAGCGGGTCTTCGAAGATGTGGAAAGAGCTGCAGGCTGAGGTGGATTAACTACCTCAAACCTGATATAAAACGAGGGAACTTTAGCTTCTCAGAAGATCGCACCATTATTCAACTTCATGCTCTTCTTGGAAACAAATGGTCAATTATAGCATCTCACTTACCCGAGAGAACAGACAATGAGATAAAGAATTATTGGAACACCAACATCAAGAAAAGGCTTATCAGAATGGGATTAGATCCCATTACCCACAAACCAAAATCTCAAGCCTATGTTGGTGGTGACCACTCCAAACATGCCACCAATATGAGCCACATGGCACAATGGGAGAGTGCTCGACTTGAAGCTGAAGCTAGAGAATCCATGTTGCAAGTTGGAGCTAGCTCCTTCCTTCCCTCACAGCTAGTCACAAGCAAAATCCCCATTCAACCTTTTATTTCATCAGATTCACCATCAACTACACTCAACAACACAGTGTATAACATGTATGCCCTCACACTTGTCACCAATCATGATCTTCAATCACCGATATCCACGTGGAGCTTCCCAAATAAAAAGTGTACTGTCTCAACCAATGTAGGGCAATTCACTGACACCGAAATTTCACTCTCATATAAGGTTGATGGTAATGTTAAAGAAAGTAGTAGTCAAACTCAAAAGACAATGGAAAGCTATGAGCCAATCTTGCAAGATGATGACATTATGATGGCTGTTGAAGCATTTAGAACAGCAGGATGTGAGAGTATTCATGAATTGTTTAACAACTCTGCTGCCATGGAAGGTCTGATTAATTATTCTTCTGAAAGAGATATGTACAAGAGTACATAA 954 0.4151 MGMMPCCEKVGLKKGPWTPEEDNKLVAYVQKHGHGNWNSVPAKAGLRRCGKSCRLRWINYLKPDIKRGNFSFSEDRTIIQLHALLGNKWSIIASHLPERTDNEIKNYWNTNIKKRLIRMGLDPITHKPKSQAYVGGDHSKHATNMSHMAQWESARLEAEARESMLQVGASSFLPSQLVTSKIPIQPFISSDSPSTTLNNTVYNMYALTLVTNHDLQSPISTWSFPNKKCTVSTNVGQFTDTEISLSYKVDGNVKESSSQTQKTMESYEPILQDDDIMMAVEAFRTAGCESIHELFNNSAAMEGLINYSSERDMYKST 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00976 317 CDD SANT 69 112 IPR001005 -
Cca10g00976 317 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Cca10g00976 317 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca10g00976 317 CDD SANT 16 61 IPR001005 -
Cca10g00976 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Cca10g00976 317 PANTHER TRANSCRIPTION FACTOR MYB106 1 255 - -
Cca10g00976 317 Gene3D - 69 116 - -
Cca10g00976 317 SMART sant 13 63 IPR001005 -
Cca10g00976 317 SMART sant 66 114 IPR001005 -
Cca10g00976 317 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca10g00976 317 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Cca10g00976 317 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 255 - -
Cca10g00976 317 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Cca10g00976 317 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca10g00976 317 Gene3D - 13 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00976 Cca-Chr10 11441461 11443614 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00976 1 186 MYB Transcription Factor Family AT5G15310 64.706 9.88e-88 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca10g00976 Myb_DNA-binding 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00976 K09422 - gmx:100792464 412.149