Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00965 ATGGATGATGAAGGAATGTGCAATAGACAGATGGGAGTAGATATCTTCGACGTGATTTATAAGAATGATACGTCTCAAAACTATAATGGCAGTTGTTCATCAGTATTATCTTCTGAACATTCTGCAAATGTTACTTTATCTGATTCTAGTTCCACAGACGTGATTATGAGTAATTGTGACCTTCTCTTTGGATTATCAATATATGCTGAGCCAACTAAGAGTAAAATCATAGAGTATTCATGCTCAGCAATGGATGAGTTGTCAAAGATAGGCATTGCAGGAAATCCATTGTGGCAACTCAAGACAAATGATAGTTATGAGACTTTGAATTATATTGAATATTTGAGGCAATTTGGTCAGGTTGATGAAACCCTAAGGGAGATTGTTAAGTTGATGGAGGTTGGAGAGGGTCAAAATTTACCTAACTTTGACACGTGTCAAACTGAGCATTCAACATCAAAGACGAATCCGAGAAGAGTTCTAACCGAAGCCTCAAGAGATGTGGCACATATTAAAATGAGTCCAATCAGCATTGTAGAATTACTTATGGATGTGAACCAATGGTCGAGTGCATTTTACAATATTGTCTCAAAAGCAACAAATGTAGGTACTTTGCTAGGAGGGGAAGGAAGCTATAATGACAAATTGCATGTGATGAATGCAGAACTCCATTTGCCTACTACTTTTGTACATACTAGGGAGTGTTACTTCGGAAGGTACAGCAAGCAGTTGTCTCATAACACATGGGGTGTGGTTGATGTATCATTGGAGAAGTTTATTCCTTCTTCAACGAGTAATATTCTGAAAAGACCATCGGGTTGTTTAATTACCGAAATCTCTAACGGATATTCTGAGGTTGTATGGGTAGAGCATGTTGAACTAGACGAGTTCCAGCTGCGATTCCCTTCTATTCAAGCTTTTGGTGCAACTCGATGGCTTAATTCCTTAGTTCGATACAGTGAATGGTCACAAACCCTAAAACCATCCATATTTGAGTCAGATAAAGGGGCCGAAAGTGGGAGAGCAAGTTTGATGAAACTGGCGGATAGAATGATGAAAATGTTTTGTGCAAATGTGAGTAATACAGTAAGCAATCCATGGATGAAAATAGATGGTTACACTGGTTGCACAGATGTGAGAGTCATGATGAAGAATAATAAAGAACTTACTATGAATCTTCATGCTACAACTGTCGTTTTCACTACTTCTCTTTGGTTGGATGTCTCTCCAAATCAATTGTTCGACTTCCTTCGTCACGAGGATTCCAGAACCAAGTGGGATGTGCTTTCACATAGACTTACTATTCGAGAATTTGCGTCCATGATTAAAGGTGAAAATCTAGGGAATCGTGTTTCCCTGATGCGAGCAACTACCTCACAGGGCAAGCTTGAGATATTTTATCTGCAAGAGAGTTACACAGACTCAACAGGTTCCTACGTGATATATGCTCCACTAGACGAAGGAACTCTCTCATCTCTTTCAAAAGGATCAGACCCTGACAAAGTTATTATCCTACCATCAGGCTTTAGTATACTTCCTGGGCCCTTGCCAGGAAAAGAAGATGGAGCCACAGCAAGTTTTCTAACTGTTGCATTCCACATAGTTGACGGTGCCTCAACTAGGCCATTTATCTCTTCTCAATCAATTAAAGCCATATACAAAATTATCACCGATGCTGTTGCCTCTATAAAGAACACAGTGGTGTATCATTCATCCCAAGGATGA 1725 0.3942 MDDEGMCNRQMGVDIFDVIYKNDTSQNYNGSCSSVLSSEHSANVTLSDSSSTDVIMSNCDLLFGLSIYAEPTKSKIIEYSCSAMDELSKIGIAGNPLWQLKTNDSYETLNYIEYLRQFGQVDETLREIVKLMEVGEGQNLPNFDTCQTEHSTSKTNPRRVLTEASRDVAHIKMSPISIVELLMDVNQWSSAFYNIVSKATNVGTLLGGEGSYNDKLHVMNAELHLPTTFVHTRECYFGRYSKQLSHNTWGVVDVSLEKFIPSSTSNILKRPSGCLITEISNGYSEVVWVEHVELDEFQLRFPSIQAFGATRWLNSLVRYSEWSQTLKPSIFESDKGAESGRASLMKLADRMMKMFCANVSNTVSNPWMKIDGYTGCTDVRVMMKNNKELTMNLHATTVVFTTSLWLDVSPNQLFDFLRHEDSRTKWDVLSHRLTIREFASMIKGENLGNRVSLMRATTSQGKLEIFYLQESYTDSTGSYVIYAPLDEGTLSSLSKGSDPDKVIILPSGFSILPGPLPGKEDGATASFLTVAFHIVDGASTRPFISSQSIKAIYKIITDAVASIKNTVVYHSSQG 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00965 574 Pfam START domain 148 296 IPR002913 GO:0008289
Cca10g00965 574 SUPERFAMILY Bet v1-like 74 321 - -
Cca10g00965 574 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN ROC2 59 569 - -
Cca10g00965 574 SUPERFAMILY Bet v1-like 340 539 - -
Cca10g00965 574 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 59 569 IPR042160 -
Cca10g00965 574 ProSiteProfiles START domain profile. 69 325 IPR002913 GO:0008289
Cca10g00965 574 SMART START_1 120 322 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00965 Cca-Chr10 11237434 11242671 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00965 60 567 Homeobox Transcription Factor Family AT4G04890 38.015 7.52e-102 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00965 K09338 - jre:108992281 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00965 10 11237434 11242671 Cca10g00965 10 11237434 11242671 ECH