Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00961 ATGGATACCTTATTCTCTTGCATATCCTGTCGGGCCCTGTTGGGTCGTAAATCATCCTCCCATTCAAGCCCGTTGGGCCCAGAAAACTCGGCATCCACTTCCTCCAATCACTCCAACACCATCCAAAGCCACAGATTCgacgtgttcatcagtttcagaggtgctgacacgcgcaacactttcgttgaccatctctacgctcatcttatccgaaagggtattttcgtctttaaggatgacaagaagctccagaaagggaaatccatttcatcgcagcttgtacaagcgatccaaggctccagggtttctatcatcgtcttttcggaagattacgctgcctcgacgtggtgcttggatgaaatggccaccattgctgaatgccgacaacatttgaaccaagttgttttccctgtcttctatggcgtggatccgtctcatgtaagataccagaatggggtgtacgcgaatgcctttgctttgcacaaaaggaaattcaaacaagatccagacaaggttcatcggtgggggagagcaatgacgggtttggccagttcagctggttgggatgtcaggaacaagtcagaatttaaacaaattgaagagattgtacaagcagtaataaaaacattgggtcataaattttcaggatttgctgatgatcttattggaatacaaccacgtgtgcaagtgttagaaaatattttaaaattaaacttagaaaatgatgattttcgagttttaggaatttggggaatgggtggaattggaaagacaactcttgtagctgccttgtatgatagaatatcatacaagtttgatgcttattgtttcattgaggatgtaaagaaaatttataaagatggaggcactattgctatacaaaaaaatattcttcgtcaaacaatagacgagaaaaatcttgaaatatgtagttctttagaaatatcaggaattgtaaagaataggctacacaacatgaaggtcttaatggttcttgacaatgtagaccaaatagagcaattagataatttggccataaatcctaaattgcttttcaaaggaagtagaatgattattaccactagggatgagcatattctaaaagtgtatggagcatatgtgcacaaggtttcattattgaatgaaaatgatgctcgtgaattgttttgtagaaaagccttcaaaactgaagaccagagtagtagttgtgtggagttgattcctgaggtactaaaatatgtccaatgccttcctttagcaattaaagtaatgggttctttcttgtgtactcgtgatgcaactcaatggagagatgccttgaatagattaaagaatagtccggatgataaaattatgaatgtccttcaagtaagtgttgatggactacaatatcatgaaaaagaaattttcttacatattgcttgtttctttaaaggggagagggaggattatgttaagcgaattctagattgttgtggattacaccctcacattgggattctaggaatcattgagaaatcactcataactattagagatcaagaagttcacatgcatgaaacgttacaagaattgggaaagaaaattgttcgtgatcaatttcctgaagagccaggatcttggagtagaatatggctttatgaagaCTTCTTTCGCGTCTTGATGAATAAAACGGGAACAGACAATGTTAAAGCCATAGTTCTAAATCAAAAAGAAGATATCTTCAAATGTAGCGTGGATGGATTGTCAAAAATGAAGAACCTTACATTACTTATATTAAATCATACTAATTTTTCAGGAAGCCTTGATTTTCTGTCTAACAAGCTGCGATATCTTCTGTGGCATGGTTATCCATTTGCTTCTTTGCCGTCATTTTTTACCGGCTTTGGTCTTGTGGAGTTAAATATACCTAATAGTAGCATCAAATATGTATGGGAAGACTTCAAGaatttcccctacttgaaaaggatggatttgagcaactccaaatatcttttagagaccccaaatttttctgggatcccaaaacttgagcgacttgatctttcaggatgcacaagtttaagactagtccatccatcaattggacttcttgaaaaacttgctttcttgaatttacaaaattgtagcaatctgatcaGCATCAACTTTGGCGATGAATCTAATCTGTGTTCTCTGAGAGTTCTACATCTCTCTGGTTGCATTAAACTTGAAAACACCCCAGATTTTACAAGTGCAACAAATCTGGAGTACCTTGACATTGATGGATGTACCAGTTTATCCTTGGTTGATGAATCTATTGGAGCCCTTacaaagcttacattcttgagtttgagagactgcaaaaaacttgttagtatacctaacaacattaatacaatgacatctcttcaaactctagatttatgtggatgtTTGAAACTTACATATATGCCCCTAGGAGAAGTTTTCAATTCTTCATCCCATTTAGAATCTTTGATTTTTCTGGACATAGGCttttgcaatcttcttgaagttcctgatgctattggagaattaagttgtttagaaagactgaatttacaaggaaataatttcgttgcactaccttattccatcaaggggctacaatgtctagcatatttaaacttgtctcattgccatcaacttacagctttgcctgaccttccatcaagaagtgcttcattagtgggaagataTTTTAAAATGGTATCTGGATCTCATGATCATAGATCAGGTTTATATGTTTTTGATTGTCCCAAGGTGGCTGATATGTTGTCTGCTCATTGGAATTGGATGTCCCCGTGCAAAGACTTGGAACTTGTATGGCTAATGAGGCTGATTGAGGAACCCTATCATTTTCGGTGTGGCTTTGACATTGTTGTTCCTTGGGGTTGGAAAAATGTTCCACTGTGGTTCAATCAAGGATTTAAAGGGGATTCAGTTATAAGGATAAAGCACTTTAAAATGGACGACAATTGGATTGGCTTTGCCTTTTGTGTTGTATTTGAGGCAAACAATCGTCCTGTGGTTTCTACTTCTCCACATAGTTCATCGTCTTCCCCACCACACCATCCGTTTTATCTTTCTTTTGAAGGTGAACACACAGAAGAATACTTTGATATGTCACTTGATTTGGAGTTGGACAAGATTGATGGATCAAAACATATTTGGATCATTTATATCTCTAGGCAACACTGTCATTTTGTGAAAAATGAGGCACATATCACATTTAAAGCCCACCCAGGTGTTAAGATCATTAAATGGGGGATGAGCAGCATATTCAAGCAAGATATAGATTACTTAAAAAGGAAGCAACTAGGACAGCCTCTTTCACCCCATCCAAATTGGGATAATGATGTACATTATATTAACTTTGATATTGTAGAGAATAACAACAACACTATGCCTAAAATCCATCTTCCTTACAATTGGTTGATCACAGAGGAGGATGAAGTTGAGAATATTGAAGCAAAGGAGAAAGAAAATAACCTCGCTAATGTGGGGCTTTAA 3513 0.1651 MDTLFSCISCRALLGRKSSSHSSPLGPENSASTSSNHSNTIQSHRFDVFISFRGADTRNTFVDHLYAHLIRKGIFVFKDDKKLQKGKSISSQLVQAIQGSRVSIIVFSEDYAASTWCLDEMATIAECRQHLNQVVFPVFYGVDPSHVRYQNGVYANAFALHKRKFKQDPDKVHRWGRAMTGLASSAGWDVRNKSEFKQIEEIVQAVIKTLGHKFSGFADDLIGIQPRVQVLENILKLNLENDDFRVLGIWGMGGIGKTTLVAALYDRISYKFDAYCFIEDVKKIYKDGGTIAIQKNILRQTIDEKNLEICSSLEISGIVKNRLHNMKVLMVLDNVDQIEQLDNLAINPKLLFKGSRMIITTRDEHILKVYGAYVHKVSLLNENDARELFCRKAFKTEDQSSSCVELIPEVLKYVQCLPLAIKVMGSFLCTRDATQWRDALNRLKNSPDDKIMNVLQVSVDGLQYHEKEIFLHIACFFKGEREDYVKRILDCCGLHPHIGILGIIEKSLITIRDQEVHMHETLQELGKKIVRDQFPEEPGSWSRIWLYEDFFRVLMNKTGTDNVKAIVLNQKEDIFKCSVDGLSKMKNLTLLILNHTNFSGSLDFLSNKLRYLLWHGYPFASLPSFFTGFGLVELNIPNSSIKYVWEDFKNFPYLKRMDLSNSKYLLETPNFSGIPKLERLDLSGCTSLRLVHPSIGLLEKLAFLNLQNCSNLISINFGDESNLCSLRVLHLSGCIKLENTPDFTSATNLEYLDIDGCTSLSLVDESIGALTKLTFLSLRDCKKLVSIPNNINTMTSLQTLDLCGCLKLTYMPLGEVFNSSSHLESLIFLDIGFCNLLEVPDAIGELSCLERLNLQGNNFVALPYSIKGLQCLAYLNLSHCHQLTALPDLPSRSASLVGRYFKMVSGSHDHRSGLYVFDCPKVADMLSAHWNWMSPCKDLELVWLMRLIEEPYHFRCGFDIVVPWGWKNVPLWFNQGFKGDSVIRIKHFKMDDNWIGFAFCVVFEANNRPVVSTSPHSSSSSPPHHPFYLSFEGEHTEEYFDMSLDLELDKIDGSKHIWIIYISRQHCHFVKNEAHITFKAHPGVKIIKWGMSSIFKQDIDYLKRKQLGQPLSPHPNWDNDVHYINFDIVENNNNTMPKIHLPYNWLITEEDEVENIEAKEKENNLANVGL 1170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00961 1170 Pfam C-JID domain 967 1099 IPR045344 -
Cca10g00961 1170 SMART till_3 45 185 IPR000157 GO:0007165
Cca10g00961 1170 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 39 897 - -
Cca10g00961 1170 SUPERFAMILY Toll/Interleukin receptor TIR domain 39 188 IPR035897 -
Cca10g00961 1170 Gene3D Ribonuclease Inhibitor 552 717 IPR032675 -
Cca10g00961 1170 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 39 897 IPR044974 GO:0006952
Cca10g00961 1170 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 218 473 IPR027417 -
Cca10g00961 1170 Gene3D Ribonuclease Inhibitor 721 810 IPR032675 -
Cca10g00961 1170 Gene3D Ribonuclease Inhibitor 811 944 IPR032675 -
Cca10g00961 1170 MobiDBLite consensus disorder prediction 17 39 - -
Cca10g00961 1170 Pfam NB-ARC domain 231 449 IPR002182 GO:0043531
Cca10g00961 1170 SUPERFAMILY L domain-like 578 892 - -
Cca10g00961 1170 SUPERFAMILY "Winged helix" DNA-binding domain 449 554 IPR036390 -
Cca10g00961 1170 Pfam TIR domain 46 213 IPR000157 GO:0007165
Cca10g00961 1170 Gene3D - 42 216 IPR035897 -
Cca10g00961 1170 Gene3D - 379 463 IPR042197 -
Cca10g00961 1170 PRINTS Disease resistance protein signature 246 261 - -
Cca10g00961 1170 PRINTS Disease resistance protein signature 322 336 - -
Cca10g00961 1170 PRINTS Disease resistance protein signature 414 428 - -
Cca10g00961 1170 PRINTS Disease resistance protein signature 672 688 - -
Cca10g00961 1170 ProSiteProfiles TIR domain profile. 44 210 IPR000157 GO:0007165
Cca10g00961 1170 Gene3D - 219 377 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00961 Cca-Chr10 11145714 11154666 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00961 721 896 WRKY Transcription Factor Family AT4G12020 37.853 2.72e-17 86.3