Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00960 atggaaaaaaccacacaaggttcgccgatggaagagagccatgaaggttttggccagttctgctggttgggatgtcaggaacaaGGAGCGGATAATGTTCAAGCCATAGTGCTAAATAAAAGAGAAGATATAACTGAATGTAACATCGAAGGAATGTCGAGAATGAAGAACCTTAGATTACTCATATTATATCATAGCACATTTTCAGGAAGCCTTGATTATCTTTCTTCCAAGTTGCGATATTTTTCGTGGAATAATTACCCATTTGATTCTTTGCCATCAAATTTTGTTGCAATTGATCTTGTGGAACTGAATATGCCTAATAGCAAAATCAAACGTGTGTGGGAAGGCTGCAAGAATTTTCCCAATATGAAAAGGATCGAGTTGAGTAACTCCAAATATCTTACAGAGAGTCCAGACTTTTCTAAGATCCCAAAACTTGAGCGACTTGATCTTTCTGGATGCACAAGTTTATCGGAGGTCCATCCAACAATTGGACTTCTTGAAAAACTTGCTTTCTTAAGTTTACGAAACTGTAACAATCTAGTCAGCATCAACTTTGATAAAAAATCTAATCTAAGTTCTTTGAGAGTTCTACACCTCAGTGGTTGCACTAAACTTAAAAATACTCCAGATTTTACAAGTGCAACAAATCTTGAGTATCTTGACATTGATGGATGTACAAGCTTAACCTTGATTGATGAATCTATTGGATCCCTTGCAAATCTTACATACTTGAGCTTGAGAGATTGCAAAAATGTTGTCTCTATACCTCATACCATTAATACCATGTCGTCACTTCAAACTCTTGATTTACGTGGCTGCTTGAAACTTGTGAATCTTTCCCTAGGAATAACCGTAAATGCATCCTATTTGATGCCGTTGATTTTTCTGGACATAAGTTTTTGCAATCTACTTGAATTACCTGATGCTATTCTTATGTTAGAGTGTTTAGAAAGAATGAATCTACAGGGGAACAATTTTGTTTCAATACCTAATTTGTTTCGGCTACGTCGTCTAGCATATTTAAACTTGTCTCATTGCAGTAAGCTTGAACGTTTGCCTCAACTTCCTCTTGACAACGATACACCAGCGGGAAGATATTTTAAAACGGTATCTGGATCTCGTGATCATAGGTCAGGGTTGTATCTTTTCGATTGTCCCAAGATGGAGCGTTTGGTTAGGCCTTGTTGGAACGGATCATGGCTCCGCTATGACTTTCGCTTTTTTGTGAGACTAATTAAGGAACCAAATCATTTTCGGTGTGGTTTCGACATTGTTTTTCCTTGGGATTGGCTTGACACGTCATTGTGGTTCAAAGACTATAAAATATTTGACGGATGTGCTGTAATGCGGATAACTGGGTTTAGTGAGGCTGACAGCTGGCTTGGCTTTTCCTTTTGTGTTTCATTTGAGGTTAAGAATGGTCCTGCAGTTTCTAGTTCTTCCCACAATCCATTTTATCTTTCCTTTGAAAGTGAATACACAGAAGAGTATTTTGATATGCCACTTAATTTAGAAGTGGACAATATTGATGAATCAAAATACTTTTGGATCATTTATATCTCAAAGGAACACTGTCATTTTGTGAAATCAGGGGCACATATCACCTTTAAAGGCCACCCACATGTTGAAATCTGTGGATGGGGGATTAGGAGCATATTTGAGCAAGATATAGATCTAGATGACTTTGAAAAGTTTTCAAAGATGGGAAAACGTCCTCATTCCAATCCTGATGATCTACCGTATCTTGACTTTGATTATGTAAAAAACAGCAACAATAGCTTTGGACCTAAAATCCAGCTTCCTTACAATTGGTTGGTTACCGACGAAGATGAAGCTGAGAATATCAATGCAAAGGCAAAAGGAAAAGGTCTCTCTTATGCGGGGCTTTAA 1896 0.3565 MEKTTQGSPMEESHEGFGQFCWLGCQEQGADNVQAIVLNKREDITECNIEGMSRMKNLRLLILYHSTFSGSLDYLSSKLRYFSWNNYPFDSLPSNFVAIDLVELNMPNSKIKRVWEGCKNFPNMKRIELSNSKYLTESPDFSKIPKLERLDLSGCTSLSEVHPTIGLLEKLAFLSLRNCNNLVSINFDKKSNLSSLRVLHLSGCTKLKNTPDFTSATNLEYLDIDGCTSLTLIDESIGSLANLTYLSLRDCKNVVSIPHTINTMSSLQTLDLRGCLKLVNLSLGITVNASYLMPLIFLDISFCNLLELPDAILMLECLERMNLQGNNFVSIPNLFRLRRLAYLNLSHCSKLERLPQLPLDNDTPAGRYFKTVSGSRDHRSGLYLFDCPKMERLVRPCWNGSWLRYDFRFFVRLIKEPNHFRCGFDIVFPWDWLDTSLWFKDYKIFDGCAVMRITGFSEADSWLGFSFCVSFEVKNGPAVSSSSHNPFYLSFESEYTEEYFDMPLNLEVDNIDESKYFWIIYISKEHCHFVKSGAHITFKGHPHVEICGWGIRSIFEQDIDLDDFEKFSKMGKRPHSNPDDLPYLDFDYVKNSNNSFGPKIQLPYNWLVTDEDEAENINAKAKGKGLSYAGL 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00960 631 Gene3D Ribonuclease Inhibitor 215 283 IPR032675 -
Cca10g00960 631 Coils Coil 631 631 - -
Cca10g00960 631 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 32 289 IPR044974 GO:0006952
Cca10g00960 631 ProSiteProfiles Leucine-rich repeat profile. 317 338 IPR001611 GO:0005515
Cca10g00960 631 SUPERFAMILY L domain-like 45 356 - -
Cca10g00960 631 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Cca10g00960 631 Gene3D Ribonuclease Inhibitor 284 400 IPR032675 -
Cca10g00960 631 Pfam Leucine Rich Repeat 100 117 IPR011713 -
Cca10g00960 631 PANTHER DISEASE RESISTANCE PROTEIN TAO1-LIKE 32 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00960 Cca-Chr10 11117066 11125084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00960 27 374 WRKY Transcription Factor Family AT4G12020 33.875 1.54e-37 148
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00960 - - var:108332841 701.049