Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00955 ATGAAGAAGAGGGTGGTGACGATACCGATCGGTGACGTGGATGGATCTAAGAGCAAAGGAGAGACATATCCACCGTCTGATTCATGGGCCTGGAGGAAGTACGGCCAGAAGCCCATCAAAGGCTCCCCTTACCCAAGGGGATACTACCGATGCAGCAGTTCAAAGGGGTGTCCCGCAAGGAAGCAAGTTGAGAGAAGCCGTGTGGACCCCACAAAGCTCATAGTCACATACTCTTACGAACACAACCACTCCCTCCCAATTCCAAAATCAAActccgccgccgcctccgccgccgcctccgcctccCTGCCTTCGCCCGCCGAATCCGCCGACCGCTTCCCGCCGGAGGAGCCCGCCGTCTTCGCCACGCACTCCGACCTCGAACTCGCCGGCGACGCGGCGGTTCTGCTCGGCCACCACCACTTCGGGTGGTTCGACGACGTCTCGTCCACCGGCGTCCTCGAGAGCCCCATCTGCGGCGAGGTGGATGACGTGGCGGTGCCGATGAGGGAGGAGGACGAGTCGCTGTTCGCCGATCTCGGCGAGTTGCCGGAGTGTTCGGCGGTTTTCCGGCGGAGGAATATTCCGAGGGGCGGCGCGATCCCCTGCGGCGGCATCACAGGATAA 627 0.5774 MKKRVVTIPIGDVDGSKSKGETYPPSDSWAWRKYGQKPIKGSPYPRGYYRCSSSKGCPARKQVERSRVDPTKLIVTYSYEHNHSLPIPKSNSAAASAAASASLPSPAESADRFPPEEPAVFATHSDLELAGDAAVLLGHHHFGWFDDVSSTGVLESPICGEVDDVAVPMREEDESLFADLGELPECSAVFRRRNIPRGGAIPCGGITG 208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00955 208 Gene3D WRKY domain 13 87 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca10g00955 208 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 194 IPR044810 GO:0003700
Cca10g00955 208 MobiDBLite consensus disorder prediction 1 27 - -
Cca10g00955 208 SUPERFAMILY WRKY DNA-binding domain 21 86 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca10g00955 208 ProSiteProfiles WRKY domain profile. 26 86 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca10g00955 208 PANTHER OS01G0750100 PROTEIN 1 194 - -
Cca10g00955 208 Pfam WRKY DNA -binding domain 27 83 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca10g00955 208 SMART WRKY_cls 25 85 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00955 Cca-Chr10 11078601 11081070 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00955 1 201 WRKY Transcription Factor Family AT1G29280 49.296 9.65e-63 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca10g00955 WRKY 9.4e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00955 - - gmx:100127424 362.459