Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00952 ATGGCCTCTATGCCGTTGGGGCCGCAACAACTTCAACCACCGGAAGTGGCGGCTCCGCCGCAAGCGGAGAATGACCGATTGAGCGTCGACTCTCGCCGCAGCTCCGACGTGTCGTCCGACAAGGAAATGTCAGCTCCTGTTGCAGAGGGTAATGATGCACTCACTGGTCATATAATCTCAACCACAATTGGAGGCAAAAATGGCGAACCTAAACGAACCATCAGTTACATGGCTGAACGTGTTGTTGGCACCGGATCATTTGGAATTGTTTTCCAGGCAAAGTGCTTGGAGACTGGGGAGCCAGTGGCTATAAAGAAGGTCTTGCAGGACAGGCGATACAAAAATCGTGAACTGCAGTTAATGCGTTTAATGGATCATCCAAATGTAGTTTCCCTGAAGCACTGTTTTTTCTCTACGACAAGCAGAGATGAACTTTTTCTGAACTTGGTGATGGAATATGTCCCTGAGACGATGCTCCGAGTTATAAAGCACTATGGTAGTATGAACCAGAGAATGCCCCTAATCTATGTGAAATTATATACATATCAAATCTTTAGGGGACTGGCATATATACATACTGTACCAGGAGTTTGCCACAGGGATGTGAAGCCTCAAAATCTTTTGGTTGATCCACTCACTCACCAAGTCAAGCTTTGCGATTTTGGGAGTGCAAAAGTTCTGGTGAAGGGTGAATCAAACATTTCTTACATATGTTCACGGTACTATCGAGCCCCAGAACTAATATTTGGTGCAACAGAATACACAACTTCTATCGATATCTGGTCAGCTGGTTGTGTCCTTGCGGAACTTCTTCTAGGCCAGCCTTTGTTCCCAGGAGAAAATCAGGTCGACCAACTTGTGGAAATTATCAAGGTTCTTGGTACTCCTACTCGAGAAGAAATTCGATGCATGAATCCTAATTATACCGATTTCAGATTCCCCCATATCAAAGCTCACCCTTGGCATAAGGTTTTTCACAAGCGAATGCCTCCTGAAGCAATTGACCTTGCATCAAGGCTTCTCCAATATTCACCAAAATTACGTTGCAATGCACTGGAAGCATTGGCACATCCTTTCTTTGACGAGCTTCGTGAGCCCAATGCCCGGCTACCTAATGGTCGTCCTCTGCCTCCACTTTTTAACTTTAAAGAGGAGCAGTTAGCTGGAGCGGACCCTGAACTGGTTGTTAAACTCATCCCCGAGCATATCAGGCGGCAAACTGGTCTAAGCTTTCTGTATCCAGCGGACActcaagcccaagctcaagcccaagctcaagcccaagctcaagctcaagctcaagctcaagctcaagctcaagctATCTCATTGCAAAAATCTTCCATATTTTCAGCAGTTAAATCTTGCTCTAGAAAAACCTTGATTGCAACATCTGTGCCATTCCATATGCCACGGAAAACTTCTCCAAAGAAACCTGACAAAGAACAATAG 1452 0.4284 MASMPLGPQQLQPPEVAAPPQAENDRLSVDSRRSSDVSSDKEMSAPVAEGNDALTGHIISTTIGGKNGEPKRTISYMAERVVGTGSFGIVFQAKCLETGEPVAIKKVLQDRRYKNRELQLMRLMDHPNVVSLKHCFFSTTSRDELFLNLVMEYVPETMLRVIKHYGSMNQRMPLIYVKLYTYQIFRGLAYIHTVPGVCHRDVKPQNLLVDPLTHQVKLCDFGSAKVLVKGESNISYICSRYYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENQVDQLVEIIKVLGTPTREEIRCMNPNYTDFRFPHIKAHPWHKVFHKRMPPEAIDLASRLLQYSPKLRCNALEALAHPFFDELREPNARLPNGRPLPPLFNFKEEQLAGADPELVVKLIPEHIRRQTGLSFLYPADTQAQAQAQAQAQAQAQAQAQAQAQAISLQKSSIFSAVKSCSRKTLIATSVPFHMPRKTSPKKPDKEQ 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00952 483 Pfam Protein kinase domain 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00952 483 Gene3D Transferase(Phosphotransferase) domain 1 156 404 - -
Cca10g00952 483 CDD STKc_GSK3 71 363 IPR039192 -
Cca10g00952 483 MobiDBLite consensus disorder prediction 1 50 - -
Cca10g00952 483 Gene3D Phosphorylase Kinase; domain 1 61 155 - -
Cca10g00952 483 ProSitePatterns Protein kinases ATP-binding region signature. 82 106 IPR017441 GO:0005524
Cca10g00952 483 SUPERFAMILY Protein kinase-like (PK-like) 75 383 IPR011009 -
Cca10g00952 483 PANTHER OS02G0236200 PROTEIN 28 410 - -
Cca10g00952 483 SMART serkin_6 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00952 483 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 28 410 - -
Cca10g00952 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 197 209 IPR008271 GO:0004672|GO:0006468
Cca10g00952 483 ProSiteProfiles Protein kinase domain profile. 76 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00952 Cca-Chr10 11044370 11049174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00952 68 415 MAP Kinase Gene Family AT1G73670 36.290 1.22e-58 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Cca10g00952 Pkinase 8e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00952 K14502 - qsu:111995841 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00952 10 11044370 11049174 Cca10g00952 10 11044370 11049174 ECH