Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00950 ATGGAGGGATACAGAAGGAAGGCGCACATAGCGCTGGTCGCCATGGTGGTGCTCGCTTCCCTCGCTGTCTTTGCTTTGCTCATCGCCCTCTCTTACTACTGCTACATCCTCAACAAGCTCTCTAACCGCCGCAAAACCCTCAAAAAAGTTGAGGACGCTAACCTTAACGACAAAAGTGACTTTGCAAATCTGCAAGTTGTCGCTGAGAAGGGACTTCAGGTGTTCACTTTCAAGCAGTTGCATTCTGCAACAGGGGGCTTCAGCAAGTCAAATGTCATTGGTCATGGTGGATTTGGACTTGTTTACCGGGGAGTGCTCAATGATGGCAGGAAAGTTGCCATAAAATTCATGGATCAAGCAGGAAAGCAAGGGGAAGAAGAATTTAAAGTAGAGGTGGAATTGCTAAGTCGTTTGCATTCTCCATATCTGCTGGCATTGCTTGGGTACTGCTCTGATAGTAATCATAAATTGCTGGTGTATGAATTTATGGCACATGGTGGACTGCAGGAACATCTTTATCCTGTCAGCAATTCTAATGTTACAGCTGTAAAGTTGGATTGGGAAACTCGATTAAGAATAGCACTTGAAGCTGCTAGGGGCTTGGAATATCTTCATGAACATGTCAGTCCTCCAGTGATTCACAGAGATTTTAAGAGCAGCAACATCCTCTTGGATAAGAAGTTTCATGCCAAAGTTTCTGATTTTGGATTGGCAAAGCTTGGACCTGATAGAGCTGGTGGACATGTTTCAACTCGAGTTTTGGGCACCCAGGGATATGTTGCTCCCGAATATGCACTAACAGGACATTTAACAACAAAATCAGATGTGTACAGTTATGGTGTTGTACTTTTGGAACTGCTCACTGGCCGAGTGCCAGTTGATATGAAGAGACCTCCAGGGGAAGGTGTTCTTGTTTCTTGGGCTCTCCCCCTTTTGACTGATAGAGAGAAGGTTGTAAAGATTATGGATCCTTCATTGGAGGGACAGTACTCCATGAAAGAGGTTGTCCAGGTGGCTGCAATTGCTGCAATGTGCGTGCAACCGGAGGCCGATTATAGGCCGCTCATGGCAGATGTTGTGCAGTCATTGGTTCCACTGGTGAAGACTCAAAGGTCCCCTTCAAAGGTAGGCAGCTCTAGTTTCCATTCCCCTAAGTTGTCCCCAGGCCCCACATCCATTTAA 1182 0.4611 MEGYRRKAHIALVAMVVLASLAVFALLIALSYYCYILNKLSNRRKTLKKVEDANLNDKSDFANLQVVAEKGLQVFTFKQLHSATGGFSKSNVIGHGGFGLVYRGVLNDGRKVAIKFMDQAGKQGEEEFKVEVELLSRLHSPYLLALLGYCSDSNHKLLVYEFMAHGGLQEHLYPVSNSNVTAVKLDWETRLRIALEAARGLEYLHEHVSPPVIHRDFKSSNILLDKKFHAKVSDFGLAKLGPDRAGGHVSTRVLGTQGYVAPEYALTGHLTTKSDVYSYGVVLLELLTGRVPVDMKRPPGEGVLVSWALPLLTDREKVVKIMDPSLEGQYSMKEVVQVAAIAAMCVQPEADYRPLMADVVQSLVPLVKTQRSPSKVGSSSFHSPKLSPGPTSI 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00950 393 MobiDBLite consensus disorder prediction 371 393 - -
Cca10g00950 393 PANTHER OS01G0750732 PROTEIN 4 382 - -
Cca10g00950 393 PANTHER OS07G0227300 PROTEIN 4 382 - -
Cca10g00950 393 Gene3D Phosphorylase Kinase; domain 1 47 162 - -
Cca10g00950 393 SUPERFAMILY Protein kinase-like (PK-like) 69 363 IPR011009 -
Cca10g00950 393 ProSitePatterns Protein kinases ATP-binding region signature. 93 115 IPR017441 GO:0005524
Cca10g00950 393 Pfam Protein tyrosine and serine/threonine kinase 90 363 IPR001245 GO:0004672|GO:0006468
Cca10g00950 393 CDD STKc_IRAK 93 366 - -
Cca10g00950 393 ProSiteProfiles Protein kinase domain profile. 87 367 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00950 393 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Cca10g00950 393 Gene3D Transferase(Phosphotransferase) domain 1 163 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00950 Cca-Chr10 11015163 11019662 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00950 2 393 Receptor kinase-like Gene Family AT3G58690 76.574 0.0 607
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Cca10g00950 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00950 - - gmx:100804893 721.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00950 10 11015163 11019662 Cca10g00950 10 11015163 11019662 ECH