Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00949 ATGTCAGGAGTTGGACCTCTCTCTCAGGATTGGGAACCGGTGGTGCTCCGCAAGAAAGCCCCCACTGCCGCCGCCCGCAAGGACGAGAAAGCTGTCAACGCAGCCCGCCGTAGCGGCGCCGAGATCGACACCGTCAAAAAATTTAATGCCGGGACAAACAAAGCTGCTTCTAGTAGTACTTCCTTGAATACGAAGAGGCTGGATGATGATACAGAGAATCTGGCTCATGATCGTGTACCAACTGAGCTCAAGAAAGCTATAATGCAGGCCCGGATGGACAAGAAACTCACCCAAGCTCAACTTGCTCAAATCATCAATGAGAAGCCTCAAGTGATCCAGGAGTATGAGTCAGGGAAAGCCATTCCAAACCAGCAGATAATTGGCAAGTTGGAGAGAGCCCTTGGTGCCAAACTGCGTGGCAAGAAATGA 429 0.5128 MSGVGPLSQDWEPVVLRKKAPTAAARKDEKAVNAARRSGAEIDTVKKFNAGTNKAASSSTSLNTKRLDDDTENLAHDRVPTELKKAIMQARMDKKLTQAQLAQIINEKPQVIQEYESGKAIPNQQIIGKLERALGAKLRGKK 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00949 142 Pfam Helix-turn-helix 87 137 IPR001387 -
Cca10g00949 142 ProSiteProfiles Cro/C1-type HTH domain profile. 87 141 IPR001387 -
Cca10g00949 142 SMART mbf_short4 86 141 IPR001387 -
Cca10g00949 142 CDD HTH_XRE 85 135 IPR001387 -
Cca10g00949 142 Gene3D - 71 142 IPR010982 GO:0003677
Cca10g00949 142 PANTHER MULTIPROTEIN BRIDGING FACTOR 1B 1 142 - -
Cca10g00949 142 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 142 - -
Cca10g00949 142 SUPERFAMILY lambda repressor-like DNA-binding domains 80 138 IPR010982 GO:0003677
Cca10g00949 142 MobiDBLite consensus disorder prediction 52 72 - -
Cca10g00949 142 Pfam Multiprotein bridging factor 1 9 79 IPR013729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00949 Cca-Chr10 11001415 11005307 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Cca10g00949 MBF1 6.7e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00949 K03627 - gmx:100500420 267.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00949 10 11001415 11005307 Cca10g00949 10 11001415 11005307 ECH