Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00948 ATGGATGAGAGAATTTGCATATCCGAAGAAGACAAGAGTAAAGGAAGCAAACCCTCTTCTCCAAGTCTTAGAAAACGTTCATTGTTCGATTTGAATGAAGAAGCTGTGAATGATGGAGATGATAGCACCAGTAGTGATGATGGCCCAAACAATGAGATATCATCTCAAGAAGGTAATTTGAGTAGTAATAATAACTCAAGTGAAGAAGGGAAAGAACGTGCAAATACGGTTAGGCAATATGTGAGATCCAAAATGCCAAGGCTCCGTTGGACTCCTGATCTTCATTTGGCTTTTGTGCATGCTGTTGAGAGGCTTGGAGGACAGGAAAGAGCAACGCCCAAGTTGGTTCTCCAGTTGATGAATGTGAGAGGACTTAGCATTGCACATGTGAAGAGTCATTTGCAGATGTATCGAAGTAAAAAGCTTGATGAATCTGGTCAAGTTTTATCCCAAAATAGGGCAATGCAAGGAAGGCATGCTATTTTTGACATGTACGGAAGACTTAATGCCCCACGACACTTTGGCGTTGATAACAGGAACTATCTGCCATCATCTCTGTTTCTGGAACAACCACCTTATGAAGTCAATGCTCATGGCCCTTCAAGATTACACCCCACAGGGCTTTTCAGTAGTCACATGATCGTAAGATCAAGTTCAGTGTGGGACAAAGATTTACATAATTACCAGTATCAACGTAGTTCCTACAGTCCTAACTTCACTAGCCGCGCCAAGTTTGATGCCGAGGTTCATAATGTGAAAAATCGAATGCCAGAATTCATAAATCATGTTCCAGCATCCAAACAAGGCCACGTGAAGGATCAACTAGAAAGGTTGAATGAGAAGAAAGGGCCACCTAGTTTCATGGAGCTAAAACTAAGTCAAGATTCAATAAATGTTAGAGATCACCTGATGAACAAAGATGCAGAAAGTGAACAAGAAATTAATACGAGACTCTCTCTTTCGTTGTTCACTTCCTCATCCTCAAATTCAACACAGCAAGCTCAATGTAGGGAACAGCATAAAGACAATACCCATGTTGAGAGTTTTTGTTTCCAAAATTATGCACCAAGGAGTCGTTTGGGATGA 1086 0.4107 MDERICISEEDKSKGSKPSSPSLRKRSLFDLNEEAVNDGDDSTSSDDGPNNEISSQEGNLSSNNNSSEEGKERANTVRQYVRSKMPRLRWTPDLHLAFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDESGQVLSQNRAMQGRHAIFDMYGRLNAPRHFGVDNRNYLPSSLFLEQPPYEVNAHGPSRLHPTGLFSSHMIVRSSSVWDKDLHNYQYQRSSYSPNFTSRAKFDAEVHNVKNRMPEFINHVPASKQGHVKDQLERLNEKKGPPSFMELKLSQDSINVRDHLMNKDAESEQEINTRLSLSLFTSSSSNSTQQAQCREQHKDNTHVESFCFQNYAPRSRLG 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00948 361 SUPERFAMILY Homeodomain-like 84 140 IPR009057 -
Cca10g00948 361 MobiDBLite consensus disorder prediction 42 70 - -
Cca10g00948 361 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 22 343 IPR044848 GO:0003700
Cca10g00948 361 Gene3D - 85 142 - -
Cca10g00948 361 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 86 141 IPR006447 GO:0003677
Cca10g00948 361 MobiDBLite consensus disorder prediction 1 76 - -
Cca10g00948 361 Pfam Myb-like DNA-binding domain 88 138 IPR001005 -
Cca10g00948 361 PANTHER MYB-LIKE HTH TRANSCRIPTIONAL REGULATOR FAMILY PROTEIN 22 343 - -
Cca10g00948 361 MobiDBLite consensus disorder prediction 1 18 - -
Cca10g00948 361 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 82 142 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00948 Cca-Chr10 10982567 10986711 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00948 74 210 G2-like Transcription Factor Family AT2G42660 51.370 1.29e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca10g00948 Myb_DNA-binding 5.7e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00948 - - gmx:102668520 529.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00948 10 10982567 10986711 Cca10g00948 10 10982567 10986711 ECH