Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00946 ATGGAGGAGACACGAGAAGATGCAGGGCCGGCAGAGCAAGGGCCATCTAATGTGTCGTGGTGGCCTTCAGATTTTGTTGAAAGATTTGGATCTGTTTCTTTGGGTTCTCAAGATGAGACCTTAACATCACAAACTCTCTGGCGCACTGGAATGCTTTCAGAACCAATACCAAATGGTTTTTATTCAGTCATTCCGGAGACAAGACTCAAAGAACTTTTTGATAGTATTCCTTCATTGGATGAGCTTCATGCTTTGGGTGGAGAGGGTTTTAAGGCAGATATCATTCTTGTGGATTCAGAGAAAGATAAAAAGCTATCCATGTTAAAGCAATTGATTGTGGCATTAGTTAGAGGATTAAACTCAAATCCAGCTGCAATAATTAAGAAGATAGCTGGATTAGTTTCTGATTTTTATAAGCGGCCCAATGTGGAAAGTCCAGCAAAAGCTGCACTAGATGAAACCTCTCACTTGTTTGAGAATCGAGGAGTCCAGATGCTGGGGCAAATAAAGCACGGTTCTTGCCGTCCTCGAGCTATCTTATTTAAAGTATTAGCTGATACTGTTGGTCTTGAAAGCAGGCTCATGGTGGGCTTGCCAAATGATGGGGTTATTGAGTGTCAAGACTCTTACAAGCATATGTCTGTGATAGTTGTATTAAATTCTGTGGAAATGCTGGTTGATCTTGTGCGATTTCCGGGCCAGTTGTTACCACGATCAACCAAGGCAGTTTTTATGACTCACATTTCTGCAGGAGAGAGTGATTCAGCAGAAAACGATTCTTGTGATTCTCCATTAGAACCAAACAGCCCCTTATTTGGGGTTTCAGAGAGTGCTGAGAAGGAGGAAAACCTCCAATTCCATAGAAGATTTGATGCATCTTCAAATGTATCAGGCATTTCCTTGAGAAACATGATGTTACGATCAAATAGCAGTTTGAGTTTGTCTCATAGTGAACCCAACATTGCCACTGCATTTGGTCGGCGTAGTCGGAGAAAGGTCATTGCTGAACAGAGGACAGCTAGTTCAAGTCCAGAACATCCATCATTTCGAGCACGCGGACGGTCCATGCTTAGTGGTGATAGGACGGCATTTAGAGATTTTTCTGATGACCAGGCCACATCAAGATCCAGCTATAGGTCAGATGGTGCATCCTCATCAGAAGCTCGTAGGATACGAAGAAGAAGCATCAGCATTACACCAGAGATTGGGGATGATATCGTAAGGGCTGTACGGGCAATGAATGAAACACTGAAGCAAAACCGTCTCTTGAGGGAACGAGGGGATGATAACTCATTCTCCCATTCTCCAAACAATAGCAGTGATGCAAATCTTCAGAAAAATGTGGCAAATTTCCACCTTGATGGTCATGATGAAAGATCTGCTTTATATTCTTGTCAGCGTGACCAAGGAACTTCACAAAAGGCAATGTCTTTACCATCTTCACCACATGATTATAGAAGTCATGCTTCTGAGAGAAGTGGACCATCGAGATATGGAGTGCATGATGAAATGGAGTCAACTTGGAATAAAGTACTGGAATCTCCAATGTTCAATGATAAACCTCTGTTACCATATGAAAAATGGAATATTGACTTCTCTGAATTGACTGTTGGAACTCGTTTCTTTGGAGAAGTTTTCCGTGGCATATGGAATGGCACAGATGTTGCAATCAAGGTTTTTCTAGAGCAAGATTTAACTGCTGAAAATATGGAAGATTTTTGCAATGAGATATCTATTCTGAGGTATCTTGTCATTCATATGCTGTTTGTTAGCATTATCTTGTTTCTCGGTGCATGCACAAAGCCTCCACGCTTGTCAATGGTTACAGAATATATGGAGTTGGGATCATTGTATTACTTGATACATTTGAGTGGTCAAAAGAAAAAGCTTAATTGGCGGAGAAGACTAAGGATGTTACGTGACATATGCAAGGGTTTGATGTGCATACACCGAATGAAGGTTGTTCACCGTGATTTGAAAAGTGCAAATTGTCTGGTGAATAAGCATTGGACTGTGAAAGTATGTGATTTTGGGCTTTCAAGAATAATGACAGATACTCCTATGAAAGATTCATCCTCGGCTGGAACTCCAGAATGGATGGCTCCTGAGCTTATTCGAAATGAACCATTCACAGAAAAATGTGATATCTTTAGCCTTGGGGTGATAATGTGGGAACTTTGCACCTTGAGCAGACCATGGGAAGGCATACCACCTGAGAGGGTGGTTTATTCCGTTGCAAATGAGGGTTCCAGATTGGAGATACCAGAAGGCCCTCTAGGCAGGCTGATTTCAGACTGTTGGGCAGAATCTCATGAGCGGCCAAGTTGTGAGGAGATTCTTTCTCGTTTGGTGGACATCGAGTACTCCATAACATGCGAAATATGA 2385 0.4201 MEETREDAGPAEQGPSNVSWWPSDFVERFGSVSLGSQDETLTSQTLWRTGMLSEPIPNGFYSVIPETRLKELFDSIPSLDELHALGGEGFKADIILVDSEKDKKLSMLKQLIVALVRGLNSNPAAIIKKIAGLVSDFYKRPNVESPAKAALDETSHLFENRGVQMLGQIKHGSCRPRAILFKVLADTVGLESRLMVGLPNDGVIECQDSYKHMSVIVVLNSVEMLVDLVRFPGQLLPRSTKAVFMTHISAGESDSAENDSCDSPLEPNSPLFGVSESAEKEENLQFHRRFDASSNVSGISLRNMMLRSNSSLSLSHSEPNIATAFGRRSRRKVIAEQRTASSSPEHPSFRARGRSMLSGDRTAFRDFSDDQATSRSSYRSDGASSSEARRIRRRSISITPEIGDDIVRAVRAMNETLKQNRLLRERGDDNSFSHSPNNSSDANLQKNVANFHLDGHDERSALYSCQRDQGTSQKAMSLPSSPHDYRSHASERSGPSRYGVHDEMESTWNKVLESPMFNDKPLLPYEKWNIDFSELTVGTRFFGEVFRGIWNGTDVAIKVFLEQDLTAENMEDFCNEISILRYLVIHMLFVSIILFLGACTKPPRLSMVTEYMELGSLYYLIHLSGQKKKLNWRRRLRMLRDICKGLMCIHRMKVVHRDLKSANCLVNKHWTVKVCDFGLSRIMTDTPMKDSSSAGTPEWMAPELIRNEPFTEKCDIFSLGVIMWELCTLSRPWEGIPPERVVYSVANEGSRLEIPEGPLGRLISDCWAESHERPSCEEILSRLVDIEYSITCEI 794
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00946 794 Pfam Protein tyrosine and serine/threonine kinase 536 783 IPR001245 GO:0004672|GO:0006468
Cca10g00946 794 CDD STKc_MAP3K-like 542 783 - -
Cca10g00946 794 SMART serkin_6 529 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00946 794 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 42 789 - -
Cca10g00946 794 MobiDBLite consensus disorder prediction 485 500 - -
Cca10g00946 794 ProSitePatterns Serine/Threonine protein kinases active-site signature. 654 666 IPR008271 GO:0004672|GO:0006468
Cca10g00946 794 MobiDBLite consensus disorder prediction 464 484 - -
Cca10g00946 794 Pfam Ethylene-responsive protein kinase Le-CTR1 41 235 - -
Cca10g00946 794 SUPERFAMILY Protein kinase-like (PK-like) 520 783 IPR011009 -
Cca10g00946 794 Gene3D Phosphorylase Kinase; domain 1 528 613 - -
Cca10g00946 794 Gene3D Transferase(Phosphotransferase) domain 1 614 792 - -
Cca10g00946 794 MobiDBLite consensus disorder prediction 420 443 - -
Cca10g00946 794 ProSiteProfiles Protein kinase domain profile. 531 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00946 794 MobiDBLite consensus disorder prediction 336 392 - -
Cca10g00946 794 MobiDBLite consensus disorder prediction 369 384 - -
Cca10g00946 794 MobiDBLite consensus disorder prediction 464 500 - -
Cca10g00946 794 PANTHER MAP KINASE KINASE KINASE-LIKE PROTEIN 42 789 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00946 Cca-Chr10 10943448 10957688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00946 1 790 MAP Kinase Kinase Kinase AT3G58640 68.932 0.0 1132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-1 Cca10g00946 PK_Tyr_Ser-Thr 3.5e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00946 - - gmx:100803469 1425.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00946 10 10943448 10957688 Cca10g00946 10 10943448 10957688 ECH