Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00945 ATGGACTCCACCGCCGGAGCTCCGTCCCTCGCGGCCGCCCCTCCGTCGTCGCGCCCGTCGCCGTTCCCCGGCCGGGAAGACTGTTGGTCGGAGGAGGCGACGTTCACGCTCATCGAGGCGTGGGGCGAGCGCCACCTCGAACTCAGCCGCGGCAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCAGAAGCACTGGCAGGAGGTCGCCGACGCCGTCAACGCCCGCCACGGCCACGTCAGCACCAAGGCGCGCCGCACCGACGTCCAGTGCAAGAACCGCATCGACACGCTCAAAAAGAAGTACAAGATCGAGAAAGCTAGGGTTTCCGATTCCGGCGATTCCGCCACCGCCTGGCCGTTCTTCCGCCGCCTCGATTTCCTCATCGGCGACACTTTTCCGGCCAAAAAATCCTCCCCGCCGGCGACCTCCTCCGACCGCCGGAGCACCCCTCCGGCCAAGTCTCCGGCGTGGTCGCTCACTCCGGTCCTTCCTCGATCCGGCTCGCAGAAGCCTTCGCCGCCGTCGCCGGAGAGCCCCGAGGAGTCATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGGCGGCTGCCGCCGCGGACAGTGAGAATTCGAATGGTTTGAAATCTAGCAGTGGGAGTGAGAAAGGGGTGATGAAGAAGAAAAGAAGAAGGGATTGTGGTGAATTGGGGTATAGAGAGGTTGCAGAGGCGTTGGTGAGGTTTGGGGAGATTTATGAGAGAGTTGAAGAACAGAAACAGAGGCAAATGGTGGAGTTGGAGAAACAGAGAATGCAGTTTGCCAAGGATTTGGAGTGCCAGCGATTGAAGCTCTTCATGGAAACGCAGGTTCAGTTGCAGAAAATCAATCGCTCCAAACGTGCTTCTGCAACTGACAAAGTGTCATAG 1188 0.4318 MDSTAGAPSLAAAPPSSRPSPFPGREDCWSEEATFTLIEAWGERHLELSRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQKHWQEVADAVNARHGHVSTKARRTDVQCKNRIDTLKKKYKIEKARVSDSGDSATAWPFFRRLDFLIGDTFPAKKSSPPATSSDRRSTPPAKSPAWSLTPVLPRSGSQKPSPPSPESPEESFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAAADSENSNGLKSSSGSEKGVMKKKRRRDCGELGYREVAEALVRFGEIYERVEEQKQRQMVELEKQRMQFAKDLECQRLKLFMETQVQLQKINRSKRASATDKVS 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00945 395 Coils Coil 339 363 - -
Cca10g00945 395 MobiDBLite consensus disorder prediction 294 313 - -
Cca10g00945 395 MobiDBLite consensus disorder prediction 180 278 - -
Cca10g00945 395 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 2 52 - -
Cca10g00945 395 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 109 214 - -
Cca10g00945 395 MobiDBLite consensus disorder prediction 184 214 - -
Cca10g00945 395 MobiDBLite consensus disorder prediction 1 26 - -
Cca10g00945 395 Coils Coil 109 111 - -
Cca10g00945 395 Pfam Myb/SANT-like DNA-binding domain 108 174 IPR044822 -
Cca10g00945 395 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 2 52 IPR044823 -
Cca10g00945 395 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 109 214 IPR044823 -
Cca10g00945 395 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 289 392 IPR044823 -
Cca10g00945 395 PANTHER SEQUENCE-SPECIFIC DNA BINDING TRANSCRIPTION FACTOR 289 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00945 Cca-Chr10 10936743 10939148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00945 16 51 Trihelix Transcription Factor Family AT3G14180 72.222 2.27e-10 60.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Cca10g00945 Myb_DNA-bind_4 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00945 - - gmx:100811154 310.071
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00945 10 10936743 10939148 Cca10g00945 10 10936743 10939148 ECH