LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca10g00941	ATGGCTTCCTCCAAGGATCGCGAGAATTTCGTCTACATCGCCAAGCTCGCCGAACAGGCTGAGCGATACGAAGAGATGGTGGATTCAATGAAGAATGTTGCGAATCTCGACGTTGAACTGACCGTGGAGGAGCGGAATTTGCTTTCTGTGGGGTACAAGAATGTGATTGCGTCGTGGAGGATCTTGTCTTCCATAGAGCAAAAGGAAGAGACAAAAGGGAATGAATTGAATGCGAAACGGATTAAGGAGTATAGGCAGAAGGTTGAATTGGAGCTTTCGAACATCTGTAATGATGTTATGAGAGTGATTGACGAACACCTTATACCTTCAGCTACAGCTGGGGAATCCACTGTGTTTTACTATAAGATGAAAGGAGATTATTATCGTTATCTTGCTGAATTTAAGTCAGGCAATGAGAAGAAGGAAGCTGCTGATCAGTCTATGAAAGCATATGAGTCTGCTACCACTGCAGCAGAGGCTGAATTACCACCCACACATCCCATTCGATTGGGTCTAGCCTTAAATTTCTCAGTTTTCTATTATGAGATCTTGAATTCACCCGAAAGAGCTTGTCATCTTGCAAAGCAGGCTTTTGATGAAGCTATTTCTGAGCTTGACACCTTGAATGAGGAGTCATACAAAGATAGCACCTTAATCATGCAACTTCTCAGGGACAACCTGACTTTGTGGACTTCTGACATCCCAGAAGATGGAGAAGATGCCCAGAAAGTGAATGGCACTGCCAAGCTTGGTGGAGCAGATGATGCAGAGTGA	774	0.4419	MASSKDRENFVYIAKLAEQAERYEEMVDSMKNVANLDVELTVEERNLLSVGYKNVIASWRILSSIEQKEETKGNELNAKRIKEYRQKVELELSNICNDVMRVIDEHLIPSATAGESTVFYYKMKGDYYRYLAEFKSGNEKKEAADQSMKAYESATTAAEAELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAISELDTLNEESYKDSTLIMQLLRDNLTLWTSDIPEDGEDAQKVNGTAKLGGADDAE	257

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca10g00941	257	PIRSF	14-3-3	1	243	IPR000308	-
	Cca10g00941	257	Coils	Coil	13	33	-	-
	Cca10g00941	257	PRINTS	14-3-3 protein zeta signature	115	137	IPR000308	-
	Cca10g00941	257	PRINTS	14-3-3 protein zeta signature	39	68	IPR000308	-
	Cca10g00941	257	PRINTS	14-3-3 protein zeta signature	84	108	IPR000308	-
	Cca10g00941	257	PRINTS	14-3-3 protein zeta signature	204	233	IPR000308	-
	Cca10g00941	257	PRINTS	14-3-3 protein zeta signature	150	176	IPR000308	-
	Cca10g00941	257	PRINTS	14-3-3 protein zeta signature	177	203	IPR000308	-
	Cca10g00941	257	Pfam	14-3-3 protein	14	231	IPR023410	-
	Cca10g00941	257	Coils	Coil	253	257	-	-
	Cca10g00941	257	Coils	Coil	191	211	-	-
	Cca10g00941	257	ProSitePatterns	14-3-3 proteins signature 2.	213	232	IPR023409	-
	Cca10g00941	257	MobiDBLite	consensus disorder prediction	234	257	-	-
	Cca10g00941	257	PANTHER	14-3-3 DOMAIN-CONTAINING PROTEIN-RELATED	3	243	-	-
	Cca10g00941	257	SMART	1433_4	7	244	IPR023410	-
	Cca10g00941	257	SUPERFAMILY	14-3-3 protein	6	233	IPR036815	-
	Cca10g00941	257	Gene3D	-	1	245	IPR036815	-
	Cca10g00941	257	ProSitePatterns	14-3-3 proteins signature 1.	45	55	IPR023409	-
	Cca10g00941	257	PANTHER	14-3-3 PROTEIN	3	243	IPR000308	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca10g00941	Cca-Chr10	10872845	10875558	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca10g00941	1	257	14-3-3 family	AT2G42590	81.749	5.79e-158	438

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca10g00941	K06630		-	gmx:547990	486.493