Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00936 ATGGAAATGGAAGCCTTTGCCCCTCAGAGGATAAGTGACGGTTTTCAAGTAAGTTGTGGTGTAATTGGAAGTGGGTATGCTTCATCTTCGTCTCTAGTGTTGGATAAGGAGAAGGGAGAGCTTGTTGAGGCCCCTGTCAAATTGGAACGCAAGGGTGTGTCCCCTGAGAGAAGCATTGAAGCCTTGAGGAACCATAGTGAGGCAGAAAGGAGAAGGAGAGCAAGAATTAATGCACATCTTGATACACTTCGCACTGTCATTCCAGGTGCTAAGAAGTTGGACAAAGCAACCTTGCTGGGTGAGGTTATTAGACATTTGAAAGAGCTGAAAACGAATGCAGCACAAGCTAGTGAAGGCCTAATGATACCAAAGGACAGTGATGAAATAAGAGTTGAAGAACAAGAGGGTGGGTTGTATGGTTTTCCTTACTCAATTAAGGCATCACTATGTTGTGAATACAAACCCGGGTTATTGAGTGATATAAGACAAGCACTTGATGCACTTCATCTTATGATAACAAGGGCGGAAATTGCAACCTTGGGGGGAAGGATGAAGAATGTGTTTGTGATAATTAGCTGCAAAGAACAAAGTGTTGAAGATGCTGAATACCGTCAGTTTCTGGCAGGGTCTGTTCATCAAGCTCTAAGATCTGTGTTAGATAGATTTTCTGTTTCACAAGACATGTTGGAAAGCAGGAAGAGAAGGAGGATTTCTATATTCAGTTCTTCATCTATAGGAGATTTCTTGTGA 750 0.424 MEMEAFAPQRISDGFQVSCGVIGSGYASSSSLVLDKEKGELVEAPVKLERKGVSPERSIEALRNHSEAERRRRARINAHLDTLRTVIPGAKKLDKATLLGEVIRHLKELKTNAAQASEGLMIPKDSDEIRVEEQEGGLYGFPYSIKASLCCEYKPGLLSDIRQALDALHLMITRAEIATLGGRMKNVFVIISCKEQSVEDAEYRQFLAGSVHQALRSVLDRFSVSQDMLESRKRRRISIFSSSSIGDFL 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00936 249 SUPERFAMILY ACT-like 148 226 IPR045865 -
Cca10g00936 249 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Cca10g00936 249 PANTHER TRANSCRIPTION FACTOR BHLH30 1 249 IPR045847 GO:0003700|GO:0006355
Cca10g00936 249 SMART finulus 66 115 IPR011598 GO:0046983
Cca10g00936 249 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 63 115 IPR036638 GO:0046983
Cca10g00936 249 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Cca10g00936 249 Gene3D - 56 118 IPR036638 GO:0046983
Cca10g00936 249 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 1 249 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00936 Cca-Chr10 10811638 10814072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00936 47 245 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 39.901 1.01e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00936 HLH 3.7e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00936 - - gmx:100783322 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00936 10 10811638 10814072 Cca10g00936 10 10811638 10814072 ECH