Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00918 ATGAGTTACTTcgacgatgatcacgaccacgaccatgaccatttccccgaccacAGCGACTTCAACAGAAGAATACTCATCACGGCCATAGTTTCCTTAACCGCGGTCTTAGTCCTTGTCGTCGCACTTCACCTCTACGCAAGGTTCGTTCTGAGGCGCCAATCTCGCCGCAGAAACGCCATACACCTTCTCACCCTCAACGTGGCTCACGCACACAACCACGCCGAACCACCCAACACAGGCCTCGACCCTACTCTCATAACCACCCTTCCCACCTTCCCCTTCAAGCAAGAACACGATTCTGTGGAATGTTCCGTGTGCTTGAGCGTTCTAGAAGACGGAGAATTGGTGAGGTTACTTCCCAATTGCAAACACAGTTTCCACGTCAGCTGCATCGACACGTGGCTCACGTCGCACTCCACGTGTCCCCTTTGTCGGACCAAAGCCGAACCGCCCCGCCTCGAGCCGCAGCCGCGTGAGGGCCCCGCCGTCGCTTCCGATGGCTCACCGAAAATTGGTGGCTCTTCAAATTCGAGGTTGAGTTCGTTCCGGAGGATTCTTAGTAGGGAGAGATCGTCCACGAGAATCCAACCTTCTACGAATGATGATGTTCAACACGACTTAGAGAGGCAGTAA 636 0.5031 MSYFDDDHDHDHDHFPDHSDFNRRILITAIVSLTAVLVLVVALHLYARFVLRRQSRRRNAIHLLTLNVAHAHNHAEPPNTGLDPTLITTLPTFPFKQEHDSVECSVCLSVLEDGELVRLLPNCKHSFHVSCIDTWLTSHSTCPLCRTKAEPPRLEPQPREGPAVASDGSPKIGGSSNSRLSSFRRILSRERSSTRIQPSTNDDVQHDLERQ 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00918 211 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 152 IPR013083 -
Cca10g00918 211 MobiDBLite consensus disorder prediction 149 211 - -
Cca10g00918 211 CDD RING-H2_EL5_like 103 146 - -
Cca10g00918 211 Pfam Ring finger domain 103 146 IPR001841 -
Cca10g00918 211 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 9 151 - -
Cca10g00918 211 PANTHER RING-H2 FINGER PROTEIN ATL40-LIKE 159 211 - -
Cca10g00918 211 SUPERFAMILY RING/U-box 97 152 - -
Cca10g00918 211 SMART ring_2 104 145 IPR001841 -
Cca10g00918 211 PANTHER RING FINGER DOMAIN-CONTAINING 9 151 - -
Cca10g00918 211 PANTHER RING FINGER DOMAIN-CONTAINING 159 211 - -
Cca10g00918 211 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00918 Cca-Chr10 10605265 10606519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00918 1 210 C3H Transcription Factor Family AT2G42360 47.303 1.56e-57 180
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00918 K19038 - gmx:100780265 249.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00918 10 10605265 10606519 Cca10g00918 10 10605265 10606519 ECH