Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00913 ATGGCGCAATTACCTCCCAAGATCCCTAACATGTCGCCAAGTTGGCCAGATTTGAAGATGCCATTGCCACCACCCCTTAACACCACAAATTATCATCAGCACAATAATCAAAACCCTTCTTGGGTGGACGAGTTCCTCGACTTCTCCTCCGCCCGGCGCGGCGCTCACCGGCGGTCGGTGAGTGACTCCATCATGGACTCGCCGGTGAAGTGTCACGACGACAACAACAATGAGAATGCGTTTGACAAGTTTGATGATGAACAATTGATGTCCATGTTTTCTGACGAAGTGGAACTCTCCGGGGTCCCCATGCCACCACCAACCACCTTGTCCTCCTCTAACCCTTCTAGCCCCTCCGATCAAAACTTCTTCTATGATGAGAAAGAGAGCAACCACCAGAAGAAGGTGCAGGAGGAGGAAGAGAAGCACCATCATCACCATTATCAATTCAAAAGTGAAGCAGATGAGGTTGAAAGCCAATGCAAACAGGAAAATATGCAGCCTCCTAATGACACCAATACTTGTTCTTCCAATGAGAGAATTACTGACCCCAAGAGAGTCAAAAGAATCTTGGCTAATAGACAATCTGCACAAAGATCGCGAGTGAGGAAGTTGCAATACATATCAGAGCTTGAGCGAAGTGTAACTTCATTACAGGCCGAAGTATCAGTGCTGTCTCCAAGGGTTGCATTTTTAGATCATCAACGCTTGCTTCTAAATGTCGACAACAGTGCTCTCAAGCAAAGAATCGCTGCCCTTGCTCAAGACAAAATCTTTAAAGATGCTCATCAAGAAGCACTGAAGAGGGAGATAGAGAGACTGAGGCGAGTTTATCACCAACAGAACCTGACGAAGATGGAAAATGCTGCAGGATCACCATTACCATCTCCATCACCAAAGCCTATATGTGATGTTCAAACAGAAAAGGAAGTACAAATCCTCAATTTTGAAGattaa 957 0.4577 MAQLPPKIPNMSPSWPDLKMPLPPPLNTTNYHQHNNQNPSWVDEFLDFSSARRGAHRRSVSDSIMDSPVKCHDDNNNENAFDKFDDEQLMSMFSDEVELSGVPMPPPTTLSSSNPSSPSDQNFFYDEKESNHQKKVQEEEEKHHHHHYQFKSEADEVESQCKQENMQPPNDTNTCSSNERITDPKRVKRILANRQSAQRSRVRKLQYISELERSVTSLQAEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIERLRRVYHQQNLTKMENAAGSPLPSPSPKPICDVQTEKEVQILNFED 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00913 318 MobiDBLite consensus disorder prediction 1 35 - -
Cca10g00913 318 MobiDBLite consensus disorder prediction 161 180 - -
Cca10g00913 318 Gene3D - 184 256 - -
Cca10g00913 318 PANTHER BASIC LEUCINE ZIPPER 34 1 315 - -
Cca10g00913 318 SMART brlzneu 181 245 IPR004827 GO:0003700|GO:0006355
Cca10g00913 318 MobiDBLite consensus disorder prediction 58 80 - -
Cca10g00913 318 Pfam bZIP transcription factor 185 229 IPR004827 GO:0003700|GO:0006355
Cca10g00913 318 MobiDBLite consensus disorder prediction 1 23 - -
Cca10g00913 318 CDD bZIP_plant_RF2 186 236 IPR044759 GO:0003700|GO:0006355
Cca10g00913 318 MobiDBLite consensus disorder prediction 284 303 - -
Cca10g00913 318 Coils Coil 264 284 - -
Cca10g00913 318 MobiDBLite consensus disorder prediction 125 160 - -
Cca10g00913 318 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 1 315 - -
Cca10g00913 318 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 188 203 IPR004827 GO:0003700|GO:0006355
Cca10g00913 318 MobiDBLite consensus disorder prediction 98 183 - -
Cca10g00913 318 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 183 235 IPR004827 GO:0003700|GO:0006355
Cca10g00913 318 SUPERFAMILY Leucine zipper domain 185 239 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00913 Cca-Chr10 10460646 10467748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00913 1 263 bZIP Transcription Factor Family AT3G58120 55.479 7.61e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Cca10g00913 bZIP_1 3.6e-09 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00913 - - gmx:100815433 479.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00913 10 10460646 10467748 Cca10g00913 10 10460646 10467748 ECH