Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00905 ATGTTAGAAAGGATGGATGATGGAGAAATTTCAAATGCTTTCCCTCACCACAACACTTCAACTGCTGCATCAAATAACCAGCCTCCTGTCTTGAAGAGGAAGAGAAACCTCCCTGGAAACCCAGATCCTGAAGCTGAAGTTATAGCCCTATCACCAAAGACACTGATGGCCACAAACAGATTCGTGTGTGAAATTTGTCTGAAGGGTTTCCAAAGGGATCAAAACCTTCAACTCCACCGACGAGGGCACAACCTTCCTTGGAAGCTGAAGCAGAGAACAAGCAAAGAAGTGAGGAAGCGAGTCTACGTGTGTCCAGAGAAGACTTGTGTCCACCACCATCACTCAAGGGCTCTGGGAGACTTAACTGGGATAAAGAAGCACTTCTGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGTGAGAAGTGCTCAAAGCGTTATGCTGTGCAGTCAGATTGGAAAGCACACTCAAAAACCTGTGGAACCAGAGAATACAAATGTGACTGTGGCACTATCTTTTCACGGAGGGATAGCTTTATCACTCATAGGGCCTTCTGTGATGCCTTAGCAGAAGAAACAGCAAGGGTGAACGCAGCATCAAACATAAGTAACTACAGCATCATGCAAAATTCCCTTGGCCCTAACATGACAACCCATTTTTCATCATTTTTCAAGCCAAACTCATGCACTGAGGAAACAGTTAATAACCAAACATCCAAGGGCCTATCCCTTTGGATGACTCAAACATCTCAGGCTCATGAGCCAATAATGGCTAACAACAATTTGCACGAGTTTCATCAACTTGGGTCTGCTTCAAGCCCAACAACAGCAATTTATGGTGGGAATCCACTTGCTTCATGCTCAAACCCACCACCCTCTAATTATCATCTAAATTGGGTGTTTGGAAATAAACTTTCCTCAAATGGAAGTCATCAAGAGCTAACTAGCACTGCTTCACTTCCACTTGTGAATAACATTGTTAAGGATAACCCAAACCTTCAGCTCATAAGTGTTCCTTCCTTGTATAGCTCACAACACCAATCCCATCAAACAAATTCAGCAAACATGTCAGCCACAGCTTTGTTGCAAAAAGCTGCACAAATTGGGACAACTTCATCGGACCCATCATTATTCCTTGGGAACATAGGTTTGAAATGCAACAGTCCAGGTCAAGATGGGAACAAATTTTGTGGCATGTACGGTTCAAGTTCAGTAGTACTCACAAGTCATGGCAGTGAGGCAGAGAATAATTATTCTGGTGATTTGTCACAAATGCCCCCTTCAAAACGACGGCACGTACAGAATGAAGAGACTGCATGGGGACAAACTAGGGACTTTCTCGGTGTTGGTGGTGTCAACCATTTGCCACCCTTCATCAACCAACGGATGGATTTGATTTGA 1398 0.4406 MLERMDDGEISNAFPHHNTSTAASNNQPPVLKRKRNLPGNPDPEAEVIALSPKTLMATNRFVCEICLKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHHSRALGDLTGIKKHFCRKHGEKKWKCEKCSKRYAVQSDWKAHSKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEETARVNAASNISNYSIMQNSLGPNMTTHFSSFFKPNSCTEETVNNQTSKGLSLWMTQTSQAHEPIMANNNLHEFHQLGSASSPTTAIYGGNPLASCSNPPPSNYHLNWVFGNKLSSNGSHQELTSTASLPLVNNIVKDNPNLQLISVPSLYSSQHQSHQTNSANMSATALLQKAAQIGTTSSDPSLFLGNIGLKCNSPGQDGNKFCGMYGSSSVVLTSHGSEAENNYSGDLSQMPPSKRRHVQNEETAWGQTRDFLGVGGVNHLPPFINQRMDLI 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00905 465 MobiDBLite consensus disorder prediction 13 31 - -
Cca10g00905 465 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Cca10g00905 465 Gene3D Classic Zinc Finger 130 196 - -
Cca10g00905 465 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 5 464 - -
Cca10g00905 465 PANTHER F-BOX ASSOCIATED PROTEIN 5 464 - -
Cca10g00905 465 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Cca10g00905 465 SUPERFAMILY beta-beta-alpha zinc fingers 132 181 IPR036236 -
Cca10g00905 465 MobiDBLite consensus disorder prediction 1 45 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00905 Cca-Chr10 10370129 10373283 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00905 28 449 IDZ Gene Family AT1G03840 51.812 1.42e-138 406
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca10g00905 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00905 K25870 - gmx:100778666 839.336
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00905 10 10370129 10373283 Cca10g00905 10 10370129 10373283 ECH