Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00903 ATGACTCAGTGCAGTTACCCTGAAAACAACCATAGCATCATTGTGGAGAGGCACAAGGATAGCTTAATCAGAACATGTCCTACATGTGGTCATCATATCAAATGCCAAGAACAGGCTGCTGGAATTCATGACTTGCCTGGTTTGCCTGCTGGAGTGAAGTTTGATCCTACTGATCAGGAGATTCTTGAACATTTGGAAGCAAAGGTGCGTTCTGATATTCACAAGCTTCATCCGTTAATCGATGAGTTCATCCCTACTCTTGAAGGAGAGAATGGAATCTGCTGTACCCATCCAGAGAAGTTGCCAGGAGTCGGCAAAGATGGGTTGATCCGACATTTCTTTCACCGACCTTCGAAAGCATACACAACTGGAACTAGAAAAAGGAGAAAGGTGCACACAGATGAAGATGGCAGTGAGACTCGGTGGCACAAAACAGGTAAGACTAGGCCAGTCTTCATCAGTGGCAAGTTAAAAGGGTACAAGAAAATTCTGGTGCTTTACACCAACTATAGAAAACAAAGGAAGCCTGAAAAGACAAACTGGGTCATGCACCAGTACCACCTTGGCAACAATGAAGAGGAGAAGGAAGGGGAGTTGGTGGTGTCCAAAGTTTTCTATCAAACGCAACCTAGACAATGTGGTTCACTCTTGAAAGACTCATATCCTGCAAAATTAAACGGTGAAGGCGTGCATGAGATAACTAATCATAAAAACACAGGGTTTGTCGAGTACTACAATAATTCTTTTGTATCCTTTGATCAAGGGGACCAGCATAGGTCTAGCACTGCCCAAGTAATCTCCCATTTCCCTGTCCACGATGGTGCTACTTTCATTCCATGA 840 0.4393 MTQCSYPENNHSIIVERHKDSLIRTCPTCGHHIKCQEQAAGIHDLPGLPAGVKFDPTDQEILEHLEAKVRSDIHKLHPLIDEFIPTLEGENGICCTHPEKLPGVGKDGLIRHFFHRPSKAYTTGTRKRRKVHTDEDGSETRWHKTGKTRPVFISGKLKGYKKILVLYTNYRKQRKPEKTNWVMHQYHLGNNEEEKEGELVVSKVFYQTQPRQCGSLLKDSYPAKLNGEGVHEITNHKNTGFVEYYNNSFVSFDQGDQHRSSTAQVISHFPVHDGATFIP 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00903 279 SUPERFAMILY NAC domain 43 207 IPR036093 GO:0003677|GO:0006355
Cca10g00903 279 MobiDBLite consensus disorder prediction 123 142 - -
Cca10g00903 279 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 278 IPR044799 GO:0003700
Cca10g00903 279 Pfam No apical meristem (NAM) protein 49 188 IPR003441 GO:0003677|GO:0006355
Cca10g00903 279 ProSiteProfiles NAC domain profile. 48 207 IPR003441 GO:0003677|GO:0006355
Cca10g00903 279 Gene3D NAC domain 57 211 IPR036093 GO:0003677|GO:0006355
Cca10g00903 279 MobiDBLite consensus disorder prediction 127 142 - -
Cca10g00903 279 PANTHER NAC TRANSCRIPTION FACTOR-LIKE PROTEIN 1 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00903 Cca-Chr10 10360583 10363097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00903 24 224 NAC Transcription Factor Family AT4G28500 80.198 2.37e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca10g00903 NAM 6.2e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00903 - - gmx:100791648 570.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00903 10 10360583 10363097 Cca10g00903 10 10360583 10363097 ECH