Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00902 ATGCTTCACCTTAACACCTTCCACCTATCAtcactctttctctttctctctctaaccaccactctctctctAAACCAAGACGGCCTCTTCCTCCTCCAAGCCAGGCTCCAACTCTCCGACCCCACCAACGCCCTCGCTTCATGGAACCGCCGCGACGCCACCCCATGCAACTGGACCTACGTCACCTGCCACCCCTCCTCCGCCGCCGTCACCGTCCTTGACCTCTCCAACCTCCAGCTCTCCGGCCCAGTCCCCGCCGCCCCCCTCTGCCGCCTCCCCGCCCTCTCCAACCTCTCCCTCGCCCTCAACAACCTCAAcgccgccctcccctccgccgccttctccgcctgcgccgcactccgccaccTCGACCTCTCCCAGAATCTCATCTCCGGCCCCCTCCCCGCCGCCCTCGCCAACCTCCCTTCCCTCGAATACCTCGACCTCTCCTCCAACAACTTCTCCGGCGAGATTCCGGCCACCTTCGGCACTTTCCGACGACTCGAATATCTGTCCCTCGTCAGCAACCTCATCAATGGAACCATTCCCTCTTCCCTCGGAAACCTTTCCACCCTCAAAAAGCTTCACCTCGCTTACAACACCTTCAACGCCGGTCCCATTCCCCAAGAGTTCGGCAACCTCACCAATCTCGAGGAGCTTTGGCTCGCAGGGTGCGACCTTGTGGGCCCCATTCCGCATTCTTTAGGGAAGTTAACCAAACTTCGGAATCTCGACTTGTCCATGAACACCCTCGTCGGAAACATACCTGAACAACTCGTGTCGGGTTTGAACAGCATTGTTCAAATCGAACTCTACCAGAACTCTCTCTCCGGGGCGTTGCCACGCGCCGCGTTCGTTAACCTTACTCATTTAGAACGATTCGATGCCTCCGCGAACGAGTTGACAGGGACGATTCCCGATGAGTTGTGCGGGTTGAGGAAACTCGGGTCGCTTAACTTGTATGATAACAAACTCGAGGGGGCCTTGCCGGAGAGTATAGTGTTGTCGGAGAGCTTGTATGAGGTGAAACTGTTCAACAACTCGCTCAATGGGTCGTTACCGCGTGGGTTGGGGGGTGGCTCCAAGTTGCAGAGGCTTGATGTTTCGTATAACCGGTTTTCCGGCGAGATTCCGGCGAGGTTGTGCGCCGGAGGAGTCTTGGAGGAGCTGATTCTGATTTACAATTCTTTCTCCGGGAGGATCCCCGAGAGTCTCGGCGAGTGCAAGAGTTTGAGGAGGGTTCGGTTTAGGAACAATAACCTCTCTGGTGTTGTGCCTGAGGGGCTATGGGGTTTGCCCCATTTGTATTTGTTGGAGCTTGTTGAGAATTCTCTTTCTGGGTCGATTTCTAATGCGGTTTCCGGGGCGAGAAATTTGTCAATTTTGTTAATTTCGGGGAATAAGTTTTCTGGGTCGGTTCCTGAGGGGATTGGGGAGTTGGTGAGTCTTGAGGAGTTTGTTGCAAGTCATAATAGTCTCACTGGTAGGATTCCGAGTAGTATCGTTCGGTTGAGTCAGTTGGATAGGCTTGTTCTCAGAGACAATAAGCTTTTCGGGGAAATTCCTGTTGGAGTTGGTGGTTGGAAGAAGCTGAATGAGCTTGATTTGGCGAATAATAGGTTAGATGGGAATGTTCCTAAGGAGTTGGGAAACTTGCCGGGGCTTAATTATCTTGATCTTTCTGGGAACCGGTTTTCGGGTGAGATTCCAATTGAGCTGCAGAATTTGAAGCTGAATTTGTTGAATTTGTCGAACAATCAGCTTTCCGGGGAGATTCCTCCTCTTTATGCCAATGATAATTATAGAAAGAGTTTTCTTGGGAATCCAGGGCTGTGTAGGGCTCTCTCTGGATTGTGTCCAAGCTTGGGTGAGAGTGAGGGTAAGAGCAGGAAGTATGTGTGGATTTTCCGGTTCATATTTGTGCTTGCTGGGATTGTGTTAATTGTTGGTGTGGCATGGTTTTACTTCAAGTTCCGTGACTTCAAGAAGATGAAAAAGGGGTTTCACATTTCCAAGTGGAGGTCGTTTCATAAGCTGGGTTTTAGTGAGTTTGAGATTGTTAAATTGCTGAGCGAGGATAATGTCATAGGTAGTGGAGCCTCTGGGAAGGTTTACAAAGTCGCACTGAGCAATGGAGAGGTGGTGGCAGTGAAGAAATTGTTGGGAGCAAACAAGATGGGAAATAATGGAGCCTCTGATTCTGAGAAGGATGGTTTTGAGATTGAGGTTGAAACATTGGGGAAGATTCGGCACAAGAATATTGTGAGGTTATGGTGTTGCTGCAATAATAGGGATAGCAAGCTGTTGGTTTATGAGTACATGCCTAATGGAAGTTTGGCTGATTTGTTGCATAGTAGCAAGAAAGGTTTGTTGGATTGGGCCACCAGATATAAAATTGCTATTGATGCCGCGGAGGGTCTTTCATATTTGCATCATGATTGTGTCCCGCCTATTGTTCATAGGGATGTCAAATCTAGCAATATCTTGCTAGATGATGAATTTGGAGCAAAAGTTGCTGATTTTGGAGTTGCCAAAATTGTTAATGGACCCAACCAAGGTGCAGAATCCATGTCTGTGATTGCCGGATCTTATGGTTACATTGCGCCAGAATATGCTTATACCCTTAGGGTGAATGAAAAAAGTGATATATATAGCTTTGGGGTGGTGATTTTGGAGTTGGTGACTGGGAAACCCCCTCTTGATCAAGAGTATGGGGAAAAGGATCTAGTAAAATGGGTTCACTCCACATTGGATCAGAAAGGACAAGATCAGGTGATTGATCCTACTCTAGATGTTCAGCACAGAGAAGAAATCAGCAAGGTACTCAACGTGGGGCTTCTTTGCACCAGCTCTCTTCCTATAACTCGCCCTTCAATGCGTAGAGTGGTGAAAATGCTGAAGGAAGTAACTGCACTTCCCAAATCCATGAGTGGAAAACTCTCTCCTTATTTTCAGGAAGACGCCTCTGATAATGATCATCAGGGAAGCTTAGTTTGA 2997 0.4728 MLHLNTFHLSSLFLFLSLTTTLSLNQDGLFLLQARLQLSDPTNALASWNRRDATPCNWTYVTCHPSSAAVTVLDLSNLQLSGPVPAAPLCRLPALSNLSLALNNLNAALPSAAFSACAALRHLDLSQNLISGPLPAALANLPSLEYLDLSSNNFSGEIPATFGTFRRLEYLSLVSNLINGTIPSSLGNLSTLKKLHLAYNTFNAGPIPQEFGNLTNLEELWLAGCDLVGPIPHSLGKLTKLRNLDLSMNTLVGNIPEQLVSGLNSIVQIELYQNSLSGALPRAAFVNLTHLERFDASANELTGTIPDELCGLRKLGSLNLYDNKLEGALPESIVLSESLYEVKLFNNSLNGSLPRGLGGGSKLQRLDVSYNRFSGEIPARLCAGGVLEELILIYNSFSGRIPESLGECKSLRRVRFRNNNLSGVVPEGLWGLPHLYLLELVENSLSGSISNAVSGARNLSILLISGNKFSGSVPEGIGELVSLEEFVASHNSLTGRIPSSIVRLSQLDRLVLRDNKLFGEIPVGVGGWKKLNELDLANNRLDGNVPKELGNLPGLNYLDLSGNRFSGEIPIELQNLKLNLLNLSNNQLSGEIPPLYANDNYRKSFLGNPGLCRALSGLCPSLGESEGKSRKYVWIFRFIFVLAGIVLIVGVAWFYFKFRDFKKMKKGFHISKWRSFHKLGFSEFEIVKLLSEDNVIGSGASGKVYKVALSNGEVVAVKKLLGANKMGNNGASDSEKDGFEIEVETLGKIRHKNIVRLWCCCNNRDSKLLVYEYMPNGSLADLLHSSKKGLLDWATRYKIAIDAAEGLSYLHHDCVPPIVHRDVKSSNILLDDEFGAKVADFGVAKIVNGPNQGAESMSVIAGSYGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGKPPLDQEYGEKDLVKWVHSTLDQKGQDQVIDPTLDVQHREEISKVLNVGLLCTSSLPITRPSMRRVVKMLKEVTALPKSMSGKLSPYFQEDASDNDHQGSLV 998
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00902 998 SMART serkin_6 690 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00902 998 SMART LRR_typ_2 361 384 IPR003591 -
Cca10g00902 998 SMART LRR_typ_2 504 528 IPR003591 -
Cca10g00902 998 SMART LRR_typ_2 312 336 IPR003591 -
Cca10g00902 998 SMART LRR_typ_2 92 116 IPR003591 -
Cca10g00902 998 SMART LRR_typ_2 552 575 IPR003591 -
Cca10g00902 998 SMART LRR_typ_2 141 164 IPR003591 -
Cca10g00902 998 SMART LRR_typ_2 238 262 IPR003591 -
Cca10g00902 998 ProSiteProfiles Protein kinase domain profile. 690 984 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00902 998 Gene3D Phosphorylase Kinase; domain 1 671 773 - -
Cca10g00902 998 ProSiteProfiles Leucine-rich repeat profile. 577 599 IPR001611 GO:0005515
Cca10g00902 998 SMART LRR_sd22_2 165 191 - -
Cca10g00902 998 SMART LRR_sd22_2 117 149 - -
Cca10g00902 998 SMART LRR_sd22_2 528 554 - -
Cca10g00902 998 SMART LRR_sd22_2 238 265 - -
Cca10g00902 998 SMART LRR_sd22_2 288 309 - -
Cca10g00902 998 Gene3D Ribonuclease Inhibitor 263 621 IPR032675 -
Cca10g00902 998 SUPERFAMILY Protein kinase-like (PK-like) 689 966 IPR011009 -
Cca10g00902 998 SUPERFAMILY L domain-like 38 378 - -
Cca10g00902 998 SUPERFAMILY RNI-like 329 598 - -
Cca10g00902 998 Gene3D Ribonuclease Inhibitor 184 262 IPR032675 -
Cca10g00902 998 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 10 978 - -
Cca10g00902 998 Pfam Protein kinase domain 692 940 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00902 998 Pfam Leucine rich repeat 166 227 IPR001611 GO:0005515
Cca10g00902 998 Pfam Leucine rich repeat 93 154 IPR001611 GO:0005515
Cca10g00902 998 Pfam Leucine rich repeat 506 565 IPR001611 GO:0005515
Cca10g00902 998 ProSitePatterns Protein kinases ATP-binding region signature. 696 719 IPR017441 GO:0005524
Cca10g00902 998 PANTHER RECEPTOR-LIKE PROTEIN KINASE HSL1 10 978 - -
Cca10g00902 998 Gene3D Ribonuclease Inhibitor 24 183 IPR032675 -
Cca10g00902 998 Pfam Leucine rich repeat N-terminal domain 25 63 IPR013210 -
Cca10g00902 998 Gene3D Transferase(Phosphotransferase) domain 1 774 980 - -
Cca10g00902 998 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00902 Cca-Chr10 10343520 10347143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00902 20 998 Receptor kinase-like Gene Family AT1G28440 60.281 0.0 1152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca10g00902 Pkinase 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00902 - - gmx:100778128 1556.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00902 10 10343520 10347143 Cca10g00902 10 10343520 10347143 ECH