Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00899 ATGGGTTGTGTGTGTGTTTTCTTGGGTTGTGTGAAGGTGGATTGGACCCCAGAATTGCACAGGAGATTCGTGCAAGCAGTGGAGCAGCTAGGAGTGGATAAGGCTGTGCCTTCAAGGATTTTGGAGATTATGGGAATTGATTGCCTCACTCGCCATAACATTGCTAGCCACCTTCAAAAATATCGATCACATAGGAAGCATTTGCTAGCGCGTGAAGCTGAAGCAGCTAGATGGAGTCAACGAAAGCAATTAGCAGGTGTAGGTATAGGAGGAGGCAAGAGAGAAGTGAACCCTTGGCTTGCACCAACCATGGGTTTCCCTCCCATGACACCAATGCACCATTTTAGACCTTTACATGTATGGGGGCATCACACCATGGACCAGTCCTTCATGCACATCTGGCCTAAACATTTATCCTATCCGCCGCCGCCACCAACATGGCCGCCACGGACAGCTCCATCTCCGCCGCCTCCGGATCCTTTATATTGGCATCAACATCAACGAGCTCCAAACGCGCCAACCCCGGGAACACCGTGTTTTCCACAACCTCTGACAACCACGAGATTTGGGTCTCAAACTGTTCCGGGCATCCCACCACACCATGCAATGTACCAAATAGTAGATCCAGGCATTGGCATCCCGGCCACCCAACCACCACCTCCACCCCTCTTCGACTTTCATCCGTCAAAGGAGAGCATAGATGCGGCTATTAGTGATGTTTTATCAAAACCATGGTTACCACTACCTCTTGGTCTTAAAGCTCCAGCACTTGATGGTGTAATGGGTGAATTACAAAGACAAGGGATTCCCAAAATCCCTCCCTCTTGTGCTTGA 834 0.4988 MGCVCVFLGCVKVDWTPELHRRFVQAVEQLGVDKAVPSRILEIMGIDCLTRHNIASHLQKYRSHRKHLLAREAEAARWSQRKQLAGVGIGGGKREVNPWLAPTMGFPPMTPMHHFRPLHVWGHHTMDQSFMHIWPKHLSYPPPPPTWPPRTAPSPPPPDPLYWHQHQRAPNAPTPGTPCFPQPLTTTRFGSQTVPGIPPHHAMYQIVDPGIGIPATQPPPPPLFDFHPSKESIDAAISDVLSKPWLPLPLGLKAPALDGVMGELQRQGIPKIPPSCA 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00899 277 PANTHER TRANSCRIPTION ACTIVATOR GLK1 11 277 IPR044825 GO:0003700|GO:0045893
Cca10g00899 277 Gene3D - 11 68 - -
Cca10g00899 277 Pfam Myb-like DNA-binding domain 13 62 IPR001005 -
Cca10g00899 277 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 11 277 - -
Cca10g00899 277 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 12 64 IPR006447 GO:0003677
Cca10g00899 277 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Cca10g00899 277 SUPERFAMILY Homeodomain-like 13 67 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00899 Cca-Chr10 10302031 10306418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00899 12 165 G2-like Transcription Factor Family AT5G44190 60.606 9.23e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca10g00899 Myb_DNA-binding 2.9e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00899 - - gmx:100775671 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00899 10 10302031 10306418 Cca10g00899 10 10302031 10306418 ECH