Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00896 ATGGCTTTGTTATTCAAGGATCCGGCGAAGCTTTCGGCGTATCGAGATAGAAGGTTCCCCGGAACGCAGGAGGATTTTGAGCACGCGCTTCTGACCTCAACTACCGTTTACGTTGGGAACATGTCATTTTACACGACGGAGGAGCAAGTTTACGAGCTCTTTTCGCGTGCTGGGGAGATTAAGAAGATCATCATGGGCTTGGACAAGAACACCAAAACGCCCTGCGGCTTCTGTTTCGTTTTGTATTATTCTCGTGAGGATACTGAGGATGCTTGCAAATACATAAGTGGGACGATACTGGATGATCGTCCAATTCGTGTTGATTTTGATTGGGGATTTCAGGATGGAAGACAGTGGGGGCGTGGTAGGAGTGGTGGCCAGGTGCGGGACGAGTATCGCACTGATTATGATCCAGGTAGAGGTGGTTATGGGAAGCTGGTTCAGAAAGAGTTAGAAGTACAAAGGCAGCTTGTAGATTATGGTGCTGGTTCTTTGGGTTCTTTTCCACCAGTTATTCCAACTTCCTATGGTAGACACGGTGGAAGTCATGGTCATGGTGGTTCCCATCGGCATGGTAGAGATTACTATAGGAAGAGACACCGAGACGATGACCGCGACCGCCACACGCACGAGTCCTCAAAAAGAACTTCAGATCATGAATCTCGGAGGAACACTGACCATGAATCTAGACCGGAAAAAAATCCACGGTTTCGTGAGAGTGGTGATTCTGATGAAGACGAGGACGATGATAGAAAAAGACGGGCTTAA 768 0.4805 MALLFKDPAKLSAYRDRRFPGTQEDFEHALLTSTTVYVGNMSFYTTEEQVYELFSRAGEIKKIIMGLDKNTKTPCGFCFVLYYSREDTEDACKYISGTILDDRPIRVDFDWGFQDGRQWGRGRSGGQVRDEYRTDYDPGRGGYGKLVQKELEVQRQLVDYGAGSLGSFPPVIPTSYGRHGGSHGHGGSHRHGRDYYRKRHRDDDRDRHTHESSKRTSDHESRRNTDHESRPEKNPRFRESGDSDEDEDDDRKRRA 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00896 255 CDD RRM_NCBP2 36 113 IPR034148 -
Cca10g00896 255 MobiDBLite consensus disorder prediction 197 255 - -
Cca10g00896 255 Gene3D - 6 150 IPR012677 -
Cca10g00896 255 PANTHER 20 KD NUCLEAR CAP BINDING PROTEIN 1 215 IPR027157 GO:0000339|GO:0005846|GO:0045292
Cca10g00896 255 SUPERFAMILY RNA-binding domain, RBD 24 144 IPR035979 GO:0003676
Cca10g00896 255 PANTHER NUCLEAR CAP-BINDING PROTEIN SUBUNIT 2 1 215 - -
Cca10g00896 255 MobiDBLite consensus disorder prediction 163 255 - -
Cca10g00896 255 MobiDBLite consensus disorder prediction 124 138 - -
Cca10g00896 255 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 34 112 IPR000504 GO:0003723
Cca10g00896 255 MobiDBLite consensus disorder prediction 120 140 - -
Cca10g00896 255 SMART rrm1_1 35 108 IPR000504 GO:0003723
Cca10g00896 255 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 36 106 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00896 Cca-Chr10 10277171 10281632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00896 33 109 Eukaryotic Initiation Factors Gene Family AT1G49760 28.571 9.10e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00896 K12883 - gmx:100776217 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00896 10 10277171 10281632 Cca10g00896 10 10277171 10281632 ECH