Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00889 ATGAGCAGTGTCTGCGCAGAACAGCACAAGTTTCACCCTTCTCACCAACTCCTCTCTCCCAAGAAATCCCTCAGAGAGATTGACATCCCTCCAAGGAAGCTCCTCACTCGCCGCGCCGCCGCTGCATGCAGCGCTGCTGACGTCTACTCCGACGAGACCATGCTGCAGAAGTTCCTCCCTTCCAACACCCTTGACGACTCCGACGAGGATGATCCTTACTCATCCGACCACTTTCGGATGTTCGAGTTCAAGGTCCGCCGCTGCACCCGCAGCCGGAGTCACGACTGGACCGACTGCCCTTTCGCCCATCCGGGCGAAAAGGCACGCCGCCGTGACCCGCGGCGGTACCACTACTCAGGCACGGTCTGTCCTGAGTATCGCCGTGGCGGGTGCAGCCGTGGCGATGCATGCGAATACGCCCATGGCGTATTCGAATGCTGGCTGCACCCTGCCAGGTACAGGACAGAGGCATGCAAGGATGGGAAGAATTGCAAGAGGAAGGTCTGTTTCTTCGCACACACTCCTCGCCAGCTCAGGATTTTGCCTGTGAATTCTTCTAATGACATGACATGCAAGAAGAACGTTAACAAGCTCTTGAACCATGGTTCGAGACCAAGCAACAACTGTTGTTTGTTTTGTCAtggtggtggtggtggtggtggcggtggtTCTTCCTCCACCGCTTCACCTACTTCCACACTTTTCAGCGTGTCTCATTTCTCGCCGCCGCTGTCACCTTCCTCGTCCACCTCGCCGCCTCAATCTCCGTTGAAACCCTTAAGCGGGGTTTCTCTTTCTCCGATTTCCCGTTACGGTGCTGTGAATGTGAACCACCATCATGGGGTGGTGAGTTACAAGGACATGTTCGCTGAGTTGGTGAATTCTTTGGAGGGTTTGAGTTTCAACGAGGGTTCACCTGTTTCCGGTGCTAAAGCACCGAACTTGCCTTGGCTTGATGTTTCTTTCAACTATGAGGaacagcagcagcaaaaacaacaacaacaacaaccacCGTTCATTGTTTCTTCTTTTGGCTGCGATGATCAGCAGTTTATTTTTTCACCACCGGCAAAGGGGAAGTTATGTTGCAACAAAATCATGGGCAACGAGAACAAGGTAGTCGGTGGTGACGTGAATGGCCCAGATCTCGCGTGGGTGAATGAGTTGCTGATGTAG 1176 0.506 MSSVCAEQHKFHPSHQLLSPKKSLREIDIPPRKLLTRRAAAACSAADVYSDETMLQKFLPSNTLDDSDEDDPYSSDHFRMFEFKVRRCTRSRSHDWTDCPFAHPGEKARRRDPRRYHYSGTVCPEYRRGGCSRGDACEYAHGVFECWLHPARYRTEACKDGKNCKRKVCFFAHTPRQLRILPVNSSNDMTCKKNVNKLLNHGSRPSNNCCLFCHGGGGGGGGGSSSTASPTSTLFSVSHFSPPLSPSSSTSPPQSPLKPLSGVSLSPISRYGAVNVNHHHGVVSYKDMFAELVNSLEGLSFNEGSPVSGAKAPNLPWLDVSFNYEEQQQQKQQQQQPPFIVSSFGCDDQQFIFSPPAKGKLCCNKIMGNENKVVGGDVNGPDLAWVNELLM 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00889 391 SMART c3hfinal6 152 175 IPR000571 GO:0046872
Cca10g00889 391 SMART c3hfinal6 117 143 IPR000571 GO:0046872
Cca10g00889 391 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 122 142 IPR000571 GO:0046872
Cca10g00889 391 MobiDBLite consensus disorder prediction 237 261 - -
Cca10g00889 391 ProSiteProfiles Zinc finger C3H1-type profile. 118 144 IPR000571 GO:0046872
Cca10g00889 391 PANTHER UNKEMPT FAMILY MEMBER 26 390 IPR045234 -
Cca10g00889 391 Gene3D - 117 181 - -
Cca10g00889 391 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2 26 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00889 Cca-Chr10 10200185 10201360 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00889 73 181 C2H2 Transcription Factor Family AT5G12850 66.972 1.36e-52 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Cca10g00889 zf-CCCH 5.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00889 K23047 - gmx:100787049 595.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00889 10 10200185 10201360 Cca10g00889 10 10200185 10201360 ECH