Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00887 ATGCCTGCCCAGAAGCGCTCCTTGCCCGACTCTCTCGACGAAGGGGACACTTCGCAGCACAGCCTCTTCCATTCTCGACACGCCAAGCACCACCAACAACAAGACCACACGCAGGAACACCACgaggacgaggaggaagaggaagaagaggaggaggaggaggaggaagaagaagaggaggaggaagaggaagaagaagaagaggaggaagaaggagatgaagaagaagaagaagaagaagaagaagCGGCGCAACATGACAAGGAAAAACCGCAGGATTCCGACGAAACCCCATCTTCTGGCTCTGAAGAAAAACCCGAATTCGTGTATGTAGAACTTCTGGAAATTCGTAAAGATGTCCAGTGTCCAATTTGCCTTGGTATTATTAAGAAGACAAGAACTGTTATGGAATGCTTGCACCGTTTCTGCAGGGAATGCATTGACAAATCGATGCGACTAGGGAACAATGAATGCCCTGCCTGCCGCACACATTGTGCCAGTCGCCGTTCCTTGAGAGATGATCCAAACTATGATGCCCTTATTTCCGCTTTGTATCCAGATATTGAGAAGTATGAAGAAGAGGAGCTTGAATTTCGTGAAGAGGAGAAGAACCGCAATAAGCTGATTCAAGCTTCAATAGCAAAAGTAGTTCAACGGCAATCTGAAGCACTGGTTAAGAGACGTAAAGATACACCAGGTACATTTGTAACAAGATCGCAGCGTAATCCACGAAGCATTCATTCTAGGAGACAAACCCAAGCAAATGAAGGATCTGAAGATAACGAGGAGGAAAATGACAACAATGAAAAGGACTCATCTTCAGCTGATGAACGAAGTACAGAAAACCGGCAGAAAAGGCGAAAGAGATGGGCTAGAGTTCGCCCCTCTCAACCCTCATCATCCATGGCAAGTCCTGATGGTGGAGGCATAGATAGCGATATGGATATTAGAGAAAATCGAGGAATTTCAAGGCAGGTGTCTAAACCTAGAAAGCTTACCTGGGGAAGAGGTGGTTTTAGAAGTAACACTCGGCATGGCAGTGGTGGTGGTAGCAATAGTAAAATTTCTCGCAGCAGTCGATTGTCTAAGTTGGTGGATCATTTCCGAAATTTGGAAGAAAACACTGACAAGTTTGATGTACATGTCATGCTTGTTTCTCTCGACAAACAAAGTACACCAAGTTTGCAGCAGCCACACATTTGCTGTCGACCAACTTTGTCTGTCAAGCACCTTTATGAATATGTTGCTCGTCAGACACCTTTGCCGGTTGAAGGAATCGAGATACTGGCAGTCAAAGGATGCTGCAGTACAAATTGTGACAAGTCAGCTGATGAGAAATCATCCCTGATACATGATGAGCTAACAACCCTGGTTATAGATCCAGACAAAGATGAACTGGAAATTTTGCAAGGACATGAGACTCTGGCAGGGCTTAAATCCAAATGCATATCCAAAAGTGGTCATTTGATGCTTGCATACAAGCGGAAGGAGACACTATAG 1500 0.414 MPAQKRSLPDSLDEGDTSQHSLFHSRHAKHHQQQDHTQEHHEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEGDEEEEEEEEEAAQHDKEKPQDSDETPSSGSEEKPEFVYVELLEIRKDVQCPICLGIIKKTRTVMECLHRFCRECIDKSMRLGNNECPACRTHCASRRSLRDDPNYDALISALYPDIEKYEEEELEFREEEKNRNKLIQASIAKVVQRQSEALVKRRKDTPGTFVTRSQRNPRSIHSRRQTQANEGSEDNEEENDNNEKDSSSADERSTENRQKRRKRWARVRPSQPSSSMASPDGGGIDSDMDIRENRGISRQVSKPRKLTWGRGGFRSNTRHGSGGGSNSKISRSSRLSKLVDHFRNLEENTDKFDVHVMLVSLDKQSTPSLQQPHICCRPTLSVKHLYEYVARQTPLPVEGIEILAVKGCCSTNCDKSADEKSSLIHDELTTLVIDPDKDELEILQGHETLAGLKSKCISKSGHLMLAYKRKETL 499
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00887 499 MobiDBLite consensus disorder prediction 84 105 - -
Cca10g00887 499 CDD RING-HC_RING1_like 122 162 - -
Cca10g00887 499 MobiDBLite consensus disorder prediction 235 252 - -
Cca10g00887 499 ProSitePatterns Zinc finger RING-type signature. 138 147 IPR017907 -
Cca10g00887 499 MobiDBLite consensus disorder prediction 9 23 - -
Cca10g00887 499 SUPERFAMILY RING/U-box 108 176 - -
Cca10g00887 499 SMART ring_2 122 161 IPR001841 -
Cca10g00887 499 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 69 192 IPR013083 -
Cca10g00887 499 MobiDBLite consensus disorder prediction 311 325 - -
Cca10g00887 499 MobiDBLite consensus disorder prediction 41 83 - -
Cca10g00887 499 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1A-RELATED 1 497 - -
Cca10g00887 499 Coils Coil 191 211 - -
Cca10g00887 499 MobiDBLite consensus disorder prediction 344 359 - -
Cca10g00887 499 MobiDBLite consensus disorder prediction 1 105 - -
Cca10g00887 499 Coils Coil 33 89 - -
Cca10g00887 499 PANTHER OS11G0578200 PROTEIN 1 497 IPR044592 -
Cca10g00887 499 Pfam Zinc finger, C3HC4 type (RING finger) 121 161 - -
Cca10g00887 499 MobiDBLite consensus disorder prediction 220 359 - -
Cca10g00887 499 ProSiteProfiles Zinc finger RING-type profile. 122 162 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00887 Cca-Chr10 10181286 10190605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00887 115 185 C3H Transcription Factor Family AT3G23060 35.135 4.60e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00887 K10695 - gmx:100776547 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00887 10 10181286 10190605 Cca10g00887 10 10181286 10190605 ECH