Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00886 ATGGAGCACTCACTTTGTGTTGTGGTCCTCACTGACTTTTCCACCTTTATATTTCCTCTCTCATCACTCACCACGCGGCCTCAACACAAACTCTACCATTCTTTCATGGAGGGGATGGTGCCAAAGGTGGCGATGAGGAGCGACAGGTTGAAGAGGGACGTGGCGGATTGTGTTGATGAGCAAATAGGGTACGTGGAGCAGGAGAAGAAGAAGAAAGTGGTGGCTGGTGGTAGTGGCAAGAAAGGGTCTTCTTGTGGTGGTGGCAATGGCATGCGGTGTTGTCAAGTGGAGAAGTGCAACGCGGATCTCCATGAGGCCAAGCAGTACCACAGGAGGCACAGGGTGTGTGAGTACCATGCCAAGGCTCAGGTTGTGCTTGTGGATGGAGTCAGACAACGGTTTTGTCAGCAATGTAGCAGGTTTGGGGAGATTCCACGAGTTAGCTGA 447 0.519 MEHSLCVVVLTDFSTFIFPLSSLTTRPQHKLYHSFMEGMVPKVAMRSDRLKRDVADCVDEQIGYVEQEKKKKVVAGGSGKKGSSCGGGNGMRCCQVEKCNADLHEAKQYHRRHRVCEYHAKAQVVLVDGVRQRFCQQCSRFGEIPRVS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00886 148 ProSiteProfiles Zinc finger SBP-type profile. 91 148 IPR004333 GO:0003677
Cca10g00886 148 SUPERFAMILY SBT domain 92 145 IPR036893 GO:0003677|GO:0005634
Cca10g00886 148 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 71 144 - -
Cca10g00886 148 Pfam SBP domain 94 144 IPR004333 GO:0003677
Cca10g00886 148 Gene3D - 90 146 IPR036893 GO:0003677|GO:0005634
Cca10g00886 148 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 71 144 IPR044817 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00886 Cca-Chr10 10174074 10176616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00886 40 141 SBP-box Gene Family AT3G60030 49.038 1.23e-23 94.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca10g00886 SBP 5.5e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00886 - - ccaj:109810441 265.774