Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00884 ATGGTTGCCACTGAAAGATTGGAGCTTTGTTTGTGTGAGAGGAGGAGGGGGCTGGGAATTTTGTGCCAGATTGCATTTGGGTGGTGGGTGGTTCTACTGTTCGTTAATCCAGTGGAGGGTCTCAGACCCTTGAGGGAGAGAACTAGGTCTTGGGATGATGAGCGGCTATTTACAAGAAAGGAAGAGGGCAACTTAGGTCCATTTTCACAATGGAACATAACAGGAACTTACAAAGGGACTTGGAAGTTTTTAGATACCACAAATGGCTCTTCCAGATTTCCAGACATCAGAAAAACAAATGGCAATTCTGTAATTGAATTAGTTAGTACGCCGACAAAGATAAGTGGAGTACATTATGTTCAGGGGGTAGTCATATTCCATGATGTGTTTGACAATGAATATGATGTTGGTGGTGCACAAATTAAAATAGAAGGTGTATATATATGGCCTTTTAGACAGCTTCGAATGGTAGCCAACAGTGGAAAAGAAGGAGAGTTGAACCAGAATGAAGATTATATTTTATCTAATCCATATCATCTGCTTGGAGTTTTCTCATCTCAGGTACTGCAAGATTCTTCACGAGATAAGATGTGGAGAAGAAAACATTCTCTGATTCATGACATGGAGAAACATTGTAATATTGAAATTGCTTCTCAGATTTCACGCTTGCCATCATCAAATAATGAGGGTGAACATGATCATTTTCATCTAGAAGGGTTAATGGAGAGTCCCTCAGCAGATGATGATGGGGACTGCTTTTCACCGTTACTGTTAAATGCAACTTCTGTCAAGATTGAGGTCTACTATAACAAAGCAGTGAACTACACCTTGATGGTTACTTTTGTCTCTTTCTTGCAAGTCCTTCTATTAATTCGTCAAATGGAGCATAGCAGCACTCAATCTGGTGCTGCTAAGGTTTCAATATTAATGATTGGCCAGCAAGCAATAATGGATGCCTATCTTTGCCTTTTACATCTAACTGCTGGAATACTAGTTGAATCCTTGTTTAATGCTTTTGCAACTGCTGCATTTTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGATACCTCCTTGCTATCTGGAAGGCAAGTAGGCCTTTGAGTAACGGGGAAGGTTGGGAGATAATGAGGCGAGAACTTTCAGTTTTATACAGTCGTTTCTATGGGATCTTGTTGGGAGGCATTCTATTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTTCTTCTTATATACTCATTTTGGATACCTCAGATAATCACCAATGTTATTCGCGATTCACGTAAACCATTGCATCCTCATTATATCTTAGGGATAACTGTTACTCGGCTAGCAATCCCATTATATATTTTTGGTTGCCCTAACAACTTCATGCGCATAGAACCAGACAAGAGCTGGTGTGTTTGTTTGGCTGTATTTATTGGACTTCAAGCTGCAATTCTCCTACTTCAGCACTATCTTGGGTCACGGTGGTTCATTCCTCGTCAGATTCTCCCTGAAAAATACAGCTATTATAGGAGGTTTGATCAAGATACAAGACATGCTTCAGACTGTGTTATTTGCATGACAGCCATTGATCTTTCCCAGCGATCCAATGATTGCATGGTGACACCTTGTGACCATTTCTTCCACTCTGGCTGTTTGCAAAGATGGATGGATATAAAGATGGAGTGCCCAACTTGCCGGCGTCCACTACCCCCTGCCTAG 1713 0.4051 MVATERLELCLCERRRGLGILCQIAFGWWVVLLFVNPVEGLRPLRERTRSWDDERLFTRKEEGNLGPFSQWNITGTYKGTWKFLDTTNGSSRFPDIRKTNGNSVIELVSTPTKISGVHYVQGVVIFHDVFDNEYDVGGAQIKIEGVYIWPFRQLRMVANSGKEGELNQNEDYILSNPYHLLGVFSSQVLQDSSRDKMWRRKHSLIHDMEKHCNIEIASQISRLPSSNNEGEHDHFHLEGLMESPSADDDGDCFSPLLLNATSVKIEVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSSTQSGAAKVSILMIGQQAIMDAYLCLLHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWEIMRRELSVLYSRFYGILLGGILFMYEFHNYLRPILLLIYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYIFGCPNNFMRIEPDKSWCVCLAVFIGLQAAILLLQHYLGSRWFIPRQILPEKYSYYRRFDQDTRHASDCVICMTAIDLSQRSNDCMVTPCDHFFHSGCLQRWMDIKMECPTCRRPLPPA 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00884 570 ProSiteProfiles Zinc finger RING-type profile. 520 564 IPR001841 -
Cca10g00884 570 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 13 570 - -
Cca10g00884 570 SUPERFAMILY RING/U-box 503 569 - -
Cca10g00884 570 SMART ringv_2 519 564 IPR011016 GO:0008270
Cca10g00884 570 Pfam Ring finger domain 519 564 IPR001841 -
Cca10g00884 570 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 570 IPR013083 -
Cca10g00884 570 SMART ring_2 520 563 IPR001841 -
Cca10g00884 570 PANTHER RING ZINC FINGER PROTEIN 13 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00884 Cca-Chr10 10155737 10165066 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00884 520 567 C3H Transcription Factor Family AT4G12190 37.500 2.45e-07 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00884 K23788 - gmx:100780140 1100.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00884 10 10155737 10165066 Cca10g00884 10 10155737 10165066 ECH