Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00882 ATGGATCCACAACAGGTAACTCAACCATCTTCAAACAAAGTCGAAAGAAAGATTGTTGAGAAAAACAGGAGAAACCAGATGAAGAACCTCTATTCCCAActctactctcttctccctaaccagAAAGTCATACCGGTGGCTGGTCAAATAGATGAAGTTATTGACTACCTCGGAAGCCTAAAGGCAAGAGTGAACATGGTGCAGGCGAAAAAAGAAAGGTTAATGGGAAGGAAGAGAAATCGTGGTGACTGTTCTAGTGCTTATGAAGCACAAAGAAGCCTAAAATCGCCAAAAATCGAGGTTCATGAAATGGGTTCTTTGCTCGCTGTCATTCTAATGTGTGGGGTTGATGACCGGTTTACTTTCTGTGAAATTATTCAAATATTGCATGAAGAGAACGTCGAGGTGATGTCTTTCAACTCTTCAACGGTTGGAGATTCAGTGTTTCATGTTGTGCACGGGGAGGTTCGGCAATCTTTGTGTCAATTTGGAGCGACCAAAGTGAGTGAGAGGCTGAAAAGGTTTGTAAAAGAATCCAACAGTGATGTGGAAATGGAGTTTGATCAATTGTGGGATTTTGAAATTGGAACAGCTGAAATGTGGGGGCTTCCAGATCCTACATTAGACATGTACGAGGGCTTACCACCAAATCTTATGCAAAATAAAGAAGCAGAAATTGATGAGTAG 687 0.3988 MDPQQVTQPSSNKVERKIVEKNRRNQMKNLYSQLYSLLPNQKVIPVAGQIDEVIDYLGSLKARVNMVQAKKERLMGRKRNRGDCSSAYEAQRSLKSPKIEVHEMGSLLAVILMCGVDDRFTFCEIIQILHEENVEVMSFNSSTVGDSVFHVVHGEVRQSLCQFGATKVSERLKRFVKESNSDVEMEFDQLWDFEIGTAEMWGLPDPTLDMYEGLPPNLMQNKEAEIDE 228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00882 228 Gene3D - 10 89 IPR036638 GO:0046983
Cca10g00882 228 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 60 IPR011598 GO:0046983
Cca10g00882 228 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 9 183 - -
Cca10g00882 228 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 11 76 IPR036638 GO:0046983
Cca10g00882 228 Pfam Helix-loop-helix DNA-binding domain 13 42 IPR011598 GO:0046983
Cca10g00882 228 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 9 183 IPR015660 GO:0003700|GO:0006357
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00882 Cca-Chr10 10108166 10109378 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00882 1 176 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 36.170 8.52e-28 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00882 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00882 - - ccaj:109810373 448.358