Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00879 ATGGATCAACAACAGGGAAGTCAACCTTCTTCAACCAAAGTGGAAAGAAAGGTTGTAGAAAAAAATAGGAGAAACCAGATGAAGAACCTCTATTCTCAACTCTACTCTATTCTTCCTACCTATAATCCTAAGGAAGCGGTGCCACTGCCTAATCAAGTAGATGAAGCTATCAACTACATCAAAAGTCTCGAGAAAAAAGTGAAGACGGCACAAGAGAAGAAAGAAAGGCTATTGACGGAAAGGGAGAGAACTCGTAGTGGCTTCTCGAGTGCTTCTGAAGCACAAGGAAGCATGAAGTCTGCAAAAATCGATATTCATGAAACCGATTCTTCTCTCCAAGTCTTTCTAACATGCGGGGTCGAAAACCAGTTCATTTTCTGTGAAATTATTAGAATATTGCATGAAGAGAACGTCGAGGTCATCTCTGCCAATTCTTCAATGGTTGGAGATTCAATGCTCCATGTTGTGCGTGGGGAGATTCGGCAATCCTTGTTTCAAATTGGAGCAACCAAAGTGAGTGAGAGGCTGAAAAGGTTTGTATACGCATCTATCAGTGATGTGGAAATGGAAACTGATTTCTGGGATTTTGAAATTGGTAGTGACATTTGGGAGCTTCTAGATCCTACATTAGACAACTGTTTACAACTAGAAGGAGATATTGACACCAGCAATATTTAA 678 0.4041 MDQQQGSQPSSTKVERKVVEKNRRNQMKNLYSQLYSILPTYNPKEAVPLPNQVDEAINYIKSLEKKVKTAQEKKERLLTERERTRSGFSSASEAQGSMKSAKIDIHETDSSLQVFLTCGVENQFIFCEIIRILHEENVEVISANSSMVGDSMLHVVRGEIRQSLFQIGATKVSERLKRFVYASISDVEMETDFWDFEIGSDIWELLDPTLDNCLQLEGDIDTSNI 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00879 225 Pfam Helix-loop-helix DNA-binding domain 14 64 IPR011598 GO:0046983
Cca10g00879 225 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 11 63 IPR011598 GO:0046983
Cca10g00879 225 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 187 IPR015660 GO:0003700|GO:0006357
Cca10g00879 225 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 85 IPR036638 GO:0046983
Cca10g00879 225 MobiDBLite consensus disorder prediction 72 87 - -
Cca10g00879 225 MobiDBLite consensus disorder prediction 1 25 - -
Cca10g00879 225 SMART finulus 17 69 IPR011598 GO:0046983
Cca10g00879 225 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 8 187 - -
Cca10g00879 225 Gene3D - 3 93 IPR036638 GO:0046983
Cca10g00879 225 MobiDBLite consensus disorder prediction 72 95 - -
Cca10g00879 225 Coils Coil 53 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00879 Cca-Chr10 10063780 10064816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00879 1 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 39.362 4.47e-33 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca10g00879 HLH 1.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00879 - - gmx:100784042 276.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00879 10 10063780 10064816 Cca10g00879 10 10063780 10064816 ECH