Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00877 ATGTCTCATCGTACCTTGTTTTTCCTCTTGCTTAACATAACTCTCCATGTTCTGACTTCAGAGTCAGCAACTGAATTTGTCTACAACAGAGACTTCAACTCCTCCAACATAAAACTCGAGGGTAACGCCACCATTCAGAACTCAATCCTCACGCTCACAAACCAGACCTTTTTCTCCATAGGGCGTGCGTTTTACCCTCACACAATACCAACGAAGCCTCCAAACTCTTCCACTCTTCTTCCTTTTGCAACTTCTTTCATCTTCTCCGTTGCCCCTTGCGAGAACTTCCCCGTGGCGCATGGTTTCGCGTTTATCTTCTCGCCTAGGATGGCCATAAATGGAGCACTCTCGGGGAACTACTTGGGCCTCTTTAACCGCTCCACTTCAGGTAACTCCTCCAACCATGTTTTGGCGGTTGAGTTTGATGATTTTAGGAACGAGGATTTCAACGAGGAGAATGATAATCATGTGGGTGTGGACTTGAATTCCATGATTTCGTTGTATTCGGAGCCTGCTGGGTTCTGGGGTGGGAGAGAGGGTGAGGAGTTGGAGGGTTTGAAGCTGGCTGATGGTAGAAACTATCAGGTTTGGATTGAGTTTGAGGATTCTGTGATTAATGTTACTATGGCCCCTGCTGGGAAAAAGAAGCCTCATAGGCCTTTGATTAGTAAGTTTATTAACCTTTCTTGGGTTTTGGAGGATGAAATGTACGTGGGGTTTTCTGGAGCAACTGGGAGAATGGTGGACATTTGTAGAATCTTGGCTTGGAGTTTTAGTAATTCTAATTTTTCAATTGGTGATGCTTTGAGTACCAAGCATTTGCCTATGTATGTGCATCCAAAGAGATTGGTGTTTAGATCAAATGGTTTTATTGTAGGTATAACTTTTGGGGCTTTTTTTGTGGGTGGATTTTGTGCTTTGGTGGTTTTCTTCAGCTTGTTTAGAACCAAAAGAGGAGCGAAGCAGGAAAGTTTTGAAGACTGGGAGTTGGAGTATTGGCCTCATAGGATTAACTATCAGGAGATTTGTGATGCAACAAGTGGATTCAGTGAAGAGAAAGTGATTGGGATTGGAACAAGTGGGAAAGTGTACAAGGGTGTTTTGAAGGGAGTGGAGGTTGCGGTTAAGAGCATCAATCACGAGACTCGCCACGGAATGAGAGAGTTTCTGGCAGAGATTTCAAGCGTAGGAAGAATGAAGCACAGGAATTTAGTGGGGTTCAGAGGGTGGAGCAAAAGAAAAGGAGGGAAACTGTTACTGGTTTATGATTACATGGTGAATGAGAGCTTGGACAAGAGGATCTTTGAGTGTGAAGAGACCATGCTGCTGAGATGGGAAGAGAGAATTAGAGTTTTGCAAAATGTAGCTGATGGAATCTTGTATCTACATGAGGGTTGGGAAGTTGAGGTCTTGCATAGGGACATCAAATCTAGTAATGTGCTACTTGACAGGGACATGAATGCTAGATTGGGGGATTTTGGGCTTGCAAGGCTGCATCACCAAGAACATGTGGCTGACACAACAAGAGTGATAGGAACTCTGGGGTACTTGGCGCCGGAACTAGTCCGAATCGGGCGACCGTCGTCTGCATGTGATGTGTTCAGTTTTGGAGTGTTGGTTTTAGAAGTAGTGTGTGGGAGAAGGCCTATTGTAGCAGATCAACCACCATTGGTTGATTGGCTGGTTTCCCTTGTGGAGAAAGGAGAATTGAGTTGTGCTATTGATGAGCGCTTGAAGGGTCAAAGTGAGTATAATGCTGAGGAAGCTGAGAGGTTGCTTCGTTTGGGTTTGTTATGTGTAAGTACAGACCCTAGTGTTAGGCCAACAATGAGGCAAGTGGTGAAAGCATTGGAGGGAGTAAAGTGCACTGAGTGTAATGAAGAGTGCATCCATTTGGGTCTTCTTGGAAAAATAGACTCAGCAGCATCATGGTCTAAGAGTTCTACAAGTTCTGCCAATGTAAATTATCCTACCTTTGATGAAATTTTGCAGACCAAGTTTTATTCTACAGCATCTTTAAGCATCTCTTGTCCCAGCCCACAGCTGGAGTCAGAGTTTGTCTCAGAAGGAAGGTGA 2076 0.4441 MSHRTLFFLLLNITLHVLTSESATEFVYNRDFNSSNIKLEGNATIQNSILTLTNQTFFSIGRAFYPHTIPTKPPNSSTLLPFATSFIFSVAPCENFPVAHGFAFIFSPRMAINGALSGNYLGLFNRSTSGNSSNHVLAVEFDDFRNEDFNEENDNHVGVDLNSMISLYSEPAGFWGGREGEELEGLKLADGRNYQVWIEFEDSVINVTMAPAGKKKPHRPLISKFINLSWVLEDEMYVGFSGATGRMVDICRILAWSFSNSNFSIGDALSTKHLPMYVHPKRLVFRSNGFIVGITFGAFFVGGFCALVVFFSLFRTKRGAKQESFEDWELEYWPHRINYQEICDATSGFSEEKVIGIGTSGKVYKGVLKGVEVAVKSINHETRHGMREFLAEISSVGRMKHRNLVGFRGWSKRKGGKLLLVYDYMVNESLDKRIFECEETMLLRWEERIRVLQNVADGILYLHEGWEVEVLHRDIKSSNVLLDRDMNARLGDFGLARLHHQEHVADTTRVIGTLGYLAPELVRIGRPSSACDVFSFGVLVLEVVCGRRPIVADQPPLVDWLVSLVEKGELSCAIDERLKGQSEYNAEEAERLLRLGLLCVSTDPSVRPTMRQVVKALEGVKCTECNEECIHLGLLGKIDSAASWSKSSTSSANVNYPTFDEILQTKFYSTASLSISCPSPQLESEFVSEGR 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00877 691 PANTHER LECTIN RECEPTOR KINASE 6 674 - -
Cca10g00877 691 Pfam Protein kinase domain 350 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00877 691 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Cca10g00877 691 Gene3D - 22 272 - -
Cca10g00877 691 PANTHER - 6 674 - -
Cca10g00877 691 ProSitePatterns Protein kinases ATP-binding region signature. 355 376 IPR017441 GO:0005524
Cca10g00877 691 SMART serkin_6 349 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00877 691 Gene3D Phosphorylase Kinase; domain 1 312 424 - -
Cca10g00877 691 Gene3D Transferase(Phosphotransferase) domain 1 425 631 - -
Cca10g00877 691 SUPERFAMILY Concanavalin A-like lectins/glucanases 24 270 IPR013320 -
Cca10g00877 691 ProSiteProfiles Protein kinase domain profile. 349 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00877 691 CDD lectin_legume_LecRK_Arcelin_ConA 24 261 IPR001220 GO:0030246
Cca10g00877 691 Pfam Legume lectin domain 24 262 IPR001220 GO:0030246
Cca10g00877 691 SUPERFAMILY Protein kinase-like (PK-like) 325 618 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00877 Cca-Chr10 10013180 10015626 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00877 22 571 Receptor kinase-like Gene Family AT4G04960 55.755 0.0 582
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca10g00877 Pkinase 8.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00877 - - gmx:100804025 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00877 10 10013180 10015626 Cca10g00877 10 10013180 10015626 ECH
Cca10g00877 10 10013180 10015626 Cca04g01132 04 12929778 12931893 PCT