Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00875 ATGGCTCGGGGGGGGCCAAAAAAGCCTAGAGGGCCTCTTATCAGTAGTAATGTTAACCTTTCAGGGGTTCTTATGGATGAGACATACGTTGGATTCACTGCAGCAACAGGGAGGATAATAGACAGTACTAAGATTCTTGCTTGGAGTTTTAGTAATTCAAATTTTTCAATTGCTGATGCTTTAGTGACAGAAAATTTGCCTTCATTTATCCATCATAAAAGGTGGTTTTCTGAAGGAAGAGCTTTAGCTGATTGGTTTCCATATGAGATTGATGCAGCAACAAGGGAGTTCTGTGAAGAGAATGTGGTTGCTGTAGGAGGGAATGGAAAGGTATATAAAGAGGTATTGCATGGAGTAGAAGTTGCAGTGAAGAGAATCCCTCAAGAAAGGATCGAAGGGATGAGAGAGTTTTTGGCTGAGGTTTCAATCCTAGGCAGAATGAAGCACAGAAATTTAGTAGGATTGAGAGGTTGGTGCAAAAAAGAAAGGGGAAATTTGATTCTAGTTTATGACTTCATGAACAACGGAAGTTTAGACAAAAGGATATTTGAGTGTGAAGAGAGAATGATGCTGACATGGGAAGAGAGGCTTCAAGTTTTGAAAAATGTAGCTGCAGGGGTTCTATACCTGCATGAGGGTTGGGAAGTCAAGGTCTTGCATAGGGACATTAAAGCAAACAATGTGCTTCTTGATAAGGACATGAATGCTAGGCTAGGAGATTTTGGATTGGCTCACATGCATGATCATCATGGACAAGTAGCCACAACAAGAGTAATAGGGACTGTAGGATACATTGCTCCTGAAGTGATTCGAACAGGAAAAGCATCAATTATGTCTGATGTGTTTGGTTTTGGAATATTGGTGTTGGAAGTAATTTGCGGGCGTAGACCTATTGAAGAACATAAACCGGGGCTAATTGAATGGTTGGTGTCCCTAATGGTGCAAGGCCAGTTGCACAGTGCTATTGATGAAAGGTTGAAGGCTAAAGGGGGATACACCATAGAGGAAGTTGAGAGATTGCTTCATTCAGGTTGTGAAAGTGTTGGAGGGGGAAATGGACTTAGTTGA 1068 0.4157 MARGGPKKPRGPLISSNVNLSGVLMDETYVGFTAATGRIIDSTKILAWSFSNSNFSIADALVTENLPSFIHHKRWFSEGRALADWFPYEIDAATREFCEENVVAVGGNGKVYKEVLHGVEVAVKRIPQERIEGMREFLAEVSILGRMKHRNLVGLRGWCKKERGNLILVYDFMNNGSLDKRIFECEERMMLTWEERLQVLKNVAAGVLYLHEGWEVKVLHRDIKANNVLLDKDMNARLGDFGLAHMHDHHGQVATTRVIGTVGYIAPEVIRTGKASIMSDVFGFGILVLEVICGRRPIEEHKPGLIEWLVSLMVQGQLHSAIDERLKAKGGYTIEEVERLLHSGCESVGGGNGLS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00875 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Cca10g00875 355 SUPERFAMILY Protein kinase-like (PK-like) 84 321 IPR011009 -
Cca10g00875 355 PANTHER LECTIN RECEPTOR KINASE 1 83 - -
Cca10g00875 355 PANTHER LECTIN RECEPTOR KINASE 89 345 - -
Cca10g00875 355 Pfam Protein kinase domain 104 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00875 355 Gene3D Transferase(Phosphotransferase) domain 1 173 347 - -
Cca10g00875 355 SUPERFAMILY Concanavalin A-like lectins/glucanases 6 55 IPR013320 -
Cca10g00875 355 SMART serkin_6 97 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00875 355 Pfam Legume lectin domain 7 54 IPR001220 GO:0030246
Cca10g00875 355 ProSiteProfiles Protein kinase domain profile. 97 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00875 355 PANTHER - 1 83 - -
Cca10g00875 355 PANTHER - 89 345 - -
Cca10g00875 355 Gene3D Phosphorylase Kinase; domain 1 86 172 - -
Cca10g00875 355 Gene3D - 2 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00875 Cca-Chr10 10006723 10007918 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00875 1 313 Receptor kinase-like Gene Family AT4G04960 55.402 6.17e-120 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca10g00875 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00875 - - gmx:100804553 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca04g01132 04 12929778 12931893 Cca10g00875 10 10006723 10007918 PCT