Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00874 ATGTCTGATGAAATTGCGGAGAAAGCAAAGAGAATTACTATCATTGTTGTCTCAATCTTATTGTTGGTGGCTATGATCATAGCCATGACAGCTGGTTTTAACGTCGATGAGGATAATTCAAATGATGATACACAGGACAACAAAAAGAACATCACCATTGTTCCTACTGGAAAATTCGTTCAAACTCTTTATCACCCTACAAATTATAAGAAAGAATGTGAGGGTTGTTTCATAGCAAAAGTCGAAAACACCACGGACCTAGAAGAACTTGTCAAGATTGTCTTCAACATTACCATTACAAAAATTAGTGATAAACTCAAAGAAATTAGCCTTTTGCATGAGGTTGAGGAGGAACCTAGAGCCAAGATAGCACTCGACACATGCAAGCAACTCATGGATCTTTCGATTGGGGAGTTAACAAGGTCACTTGATGAAATAAATGAGTTTGACCTAATAAATCTCAAAAAAATCCTTATGAATTTGAAAGTTTGGCTTAGTGATGCAATTACGTACCAAGATACTTGCTTGCATGGGTTCCAGAACACCACTAGTGAAGTTGATAAAAAGATGAAGGATTTATTAATAACAAGTATCCATAAGAGCAACAATGTCCTTGCCATTATAACACAATTGGTTGACACTATAAAAGATCCGAATGTCACAAAATTATTTGGACGTCGCCTCCTACAAGAATACGAGTCATAA 705 0.3617 MSDEIAEKAKRITIIVVSILLLVAMIIAMTAGFNVDEDNSNDDTQDNKKNITIVPTGKFVQTLYHPTNYKKECEGCFIAKVENTTDLEELVKIVFNITITKISDKLKEISLLHEVEEEPRAKIALDTCKQLMDLSIGELTRSLDEINEFDLINLKKILMNLKVWLSDAITYQDTCLHGFQNTTSEVDKKMKDLLITSIHKSNNVLAIITQLVDTIKDPNVTKLFGRRLLQEYES 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00874 234 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 60 212 IPR035513 -
Cca10g00874 234 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 212 IPR035513 -
Cca10g00874 234 PANTHER PECTINESTERASE 10 220 - -
Cca10g00874 234 SMART PMEI_2 55 207 IPR006501 GO:0004857
Cca10g00874 234 Pfam Plant invertase/pectin methylesterase inhibitor 67 194 IPR006501 GO:0004857
Cca10g00874 234 PANTHER PECTINESTERASE 10 220 - -
Cca10g00874 234 TIGRFAM PME_inhib: pectinesterase inhibitor domain 65 211 IPR006501 GO:0004857
Cca10g00874 234 CDD PMEI-like_3 66 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00874 Cca-Chr10 10003782 10004486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00874 3 231 Carbohydrate Esterase AT3G05610 35.808 4.74e-47 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00874 K01051 - gmx:100776244 300.827