Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00873 ATGGGGTGCGGAATTTCCAAGAGTGCAGCTGTGGATGACAGTAGGGAAGGTGTGACAAGGGAATTGGCTTCATCTAGCAAAAGGGTCTCAGAGATGAAGGCTTCTGCATTGAATTCCAAGAAAAGGGTCGATGGAGTTTGGAGAAAAGATGAGGTTTTGGATGGTGCTGATATGAAAGTTTCATTGATTGACAAGAAATCCAATGGTTCCATTCGGTTTTGTGGTGATCAGAATGGGGAGAGGCCTGAATTGGCTGTTATTGATCATCCTGGTCTTGGAAGGGTTCCAAAGGGTTTAGAAGGAGAGCAAGTTGCAGCAGGGTGGCCAACTTGGCTTTCTTCTGTTGCTGGTGAAGCTATCCAAGGGTGGATACCACGGAGTGCGAATTCTTTTGAGAGGTTTCATAAAATTGGTCAAGGAACCTACAGTACTGTGTATAAGGCACGTGATGTGACTCACCAAAAGATTGTAGCATTGAAGAGGGTGCGCTTTGATAATTTTGATGCTGAGAGCGTCAAGTTTATGGCAAGGGAAATCCTTGTTCTGCGTAGGCTTGACCATCCAAATGTAATAAAGTTGGAAGGCTTGATAACATCATGGACATCTCGCAACTTGTACCTTATTTTTGAATACATGGAACATGATCTTACGGGACTTGCATCCAGTACGAAGTTTTCTGAACCACAGGTTAAATGCTACATGCAGCAACTTCTTAGTGGATTAGATCATTGTCATAGTCGTGGTGTCCTCCACCGTGACATAAAGGGCTCAAATCTTCTCATTGACGATAATGGCATCTTAAAGATTGCAGATTTTGGTCTGGCAAATTTTATTGACCCCCATCATAATGTTCCATTGACCAGCCGTGTAGTAACACTGTGGTATAGACCACCAGAACTTTTACTTGGAGCATCTAATTATGGAGTTTCTGTAGATTTGTGGAGCACTGGTTGCATACTGGGGGAACTATATTGTGGCAGGCCTATACTGCCTGGAAAAACAGAGGTTGAGCAATTGCATAGGATTTTTAAACTTTGTGGCTCACCATCTGAGGACTATTGGCGTAAGCTGCGGTCGCCACATTCAACAGTATTCAAGCCTCCCCACCATTATAGGCGTTGTGTTGCTGAAATATTTAAAGAATATCCATCTACTGCCACAAGGCTTATAGAAACCCTGCTTTCTTTAGATCCCACACTCCGAGGAACAGCAGCTACAGCCCTAAAGAGTGAGGCATGGACCTAA 1245 0.4378 MGCGISKSAAVDDSREGVTRELASSSKRVSEMKASALNSKKRVDGVWRKDEVLDGADMKVSLIDKKSNGSIRFCGDQNGERPELAVIDHPGLGRVPKGLEGEQVAAGWPTWLSSVAGEAIQGWIPRSANSFERFHKIGQGTYSTVYKARDVTHQKIVALKRVRFDNFDAESVKFMAREILVLRRLDHPNVIKLEGLITSWTSRNLYLIFEYMEHDLTGLASSTKFSEPQVKCYMQQLLSGLDHCHSRGVLHRDIKGSNLLIDDNGILKIADFGLANFIDPHHNVPLTSRVVTLWYRPPELLLGASNYGVSVDLWSTGCILGELYCGRPILPGKTEVEQLHRIFKLCGSPSEDYWRKLRSPHSTVFKPPHHYRRCVAEIFKEYPSTATRLIETLLSLDPTLRGTAATALKSEAWT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00873 414 PANTHER CELL DIVISION PROTEIN KINASE 1 412 - -
Cca10g00873 414 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Cca10g00873 414 PANTHER CYCLIN-DEPENDENT KINASE 1 412 - -
Cca10g00873 414 ProSiteProfiles Protein kinase domain profile. 131 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00873 414 SUPERFAMILY Protein kinase-like (PK-like) 124 410 IPR011009 -
Cca10g00873 414 ProSitePatterns Protein kinases ATP-binding region signature. 137 160 IPR017441 GO:0005524
Cca10g00873 414 Pfam Protein kinase domain 131 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00873 414 Gene3D Transferase(Phosphotransferase) domain 1 214 414 - -
Cca10g00873 414 MobiDBLite consensus disorder prediction 1 33 - -
Cca10g00873 414 SMART serkin_6 131 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca10g00873 414 Gene3D Phosphorylase Kinase; domain 1 118 213 - -
Cca10g00873 414 CDD STKc_CDK9_like 131 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00873 Cca-Chr10 9994415 10001035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00873 123 414 Core Cell Cycle Gene Families AT5G10270 49.359 1.23e-94 291
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Cca10g00873 Pkinase 7.6e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00873 - K08819 gmx:100781209 729.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00873 10 9994415 10001035 Cca04g01131 04 12920125 12926693 PCT