Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00861 ATGGCAAGAAAATCAATAGTTCCTGCTGCTTCCTATAGATCGCTTGAAGATTCTTGGAGCCAGGAGGTGATTGCAACTGTTGAGAAGAGTATGAAAACACATGCTGACAACCTTATGCGGTCTCTTGAGGGAATTAGTTCAAGGCTGTCACAGTTGGAATTATATTGTTACAATCTTGACAAATCAATTGGAGCAATGCGATCTGATTTAGATAGCGATCATGAGGAGGCAGATTCAAAACTCAAATCTCTTGATAAACACCTTCAGGAAGTACACAGGTCTGTGCAAATTTTGAGAGACAAGCAAGAGCTAGCTGAGACTCAGAAAGAATTAGCCAAGCTTCAACTTATTCGCAAAGAATCATCTTCCTCGAGCCATCTGTGGCCCAATGAGGAGAGATCTTCGCCTTCTTCCATGTATCAAAAAAAAATCGATAATGCATCTGACACACATAACCAGGAGTTAGCCCTTGCCTTACCTCATCAAGTTGCCCCCCGACAACAGCCTGTGGCAGCGGCATCCTCCTATCAAGCACCAGCCCCAAATGCGAGTCAAGCCACTCAACAACCTCATTATTACATTATGCCCACCTCTGTGTCCAATCCACAAGCTGTAGCCCAGCTTCCTCAGAATCAGTATTTGCCTTCTGATCCACAATATCGAATTCCACAATCAACATCATCATCTCAGGTAACGCAATCTGCACCCGTGCAACAATTTTCTCAGTATCAGCAGCTACACCACCAACACCAGCAATTGCCTACACAATTACCACAACAGGTGCAACCACTGTCAACGCAGTCTCAAATGAGACCCCCCTTGACAAATGCTTACACTCCATATCCTGCAAGCCAAGCTACAAATCCTCTTCCCACAGAAACACTTGCAAACAGCATGCCCATGCAAATACCCTATTCAGGGATTCCACCCCAAGGATCTAGCCGTGGCGATGCCATGCCATATGGATACAGCATGGGAGGTAGAACATTTCCACAGCAACCTCCGCCCCAGCAAATGAAGGGCTCTTTTTCAGCACAGCCAGGTGATGTGTATGGAACTGGCGTGACCCGCACCATGGCTCCTCCTGCTAGTTCCTACATGGTGTATGATGGTGAGAGTGCCAGAGCACATCATCCACCCCAACCTTCTTATTATGCTCAAGCTGGATATCCTCCAACTAGTGCTTCCCTTCAGAACCCTGCACCACATAATCTTATGATCCAGAGCTCTAGCCAGTCTCAATTTACTCGTAGCCATCCCTACAATGAATTGGTCGAGAAATTTGTGAGCATGGGATATAGAGGCGACCATGTAGTGAGCATTATCCAGAGGATGGAGGAAACCAAGCAGCCTATAGATTTTAACACTCTACATGACCGTTTGAACGTGCATAATTCAGTGGGTCACCAGAGGGGATGGTCAGGGTAA 1428 0.4629 MARKSIVPAASYRSLEDSWSQEVIATVEKSMKTHADNLMRSLEGISSRLSQLELYCYNLDKSIGAMRSDLDSDHEEADSKLKSLDKHLQEVHRSVQILRDKQELAETQKELAKLQLIRKESSSSSHLWPNEERSSPSSMYQKKIDNASDTHNQELALALPHQVAPRQQPVAAASSYQAPAPNASQATQQPHYYIMPTSVSNPQAVAQLPQNQYLPSDPQYRIPQSTSSSQVTQSAPVQQFSQYQQLHHQHQQLPTQLPQQVQPLSTQSQMRPPLTNAYTPYPASQATNPLPTETLANSMPMQIPYSGIPPQGSSRGDAMPYGYSMGGRTFPQQPPPQQMKGSFSAQPGDVYGTGVTRTMAPPASSYMVYDGESARAHHPPQPSYYAQAGYPPTSASLQNPAPHNLMIQSSSQSQFTRSHPYNELVEKFVSMGYRGDHVVSIIQRMEETKQPIDFNTLHDRLNVHNSVGHQRGWSG 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00861 475 MobiDBLite consensus disorder prediction 168 185 - -
Cca10g00861 475 MobiDBLite consensus disorder prediction 164 185 - -
Cca10g00861 475 MobiDBLite consensus disorder prediction 213 289 - -
Cca10g00861 475 PANTHER FORMIN-LIKE PROTEIN (DUF1421) 1 473 - -
Cca10g00861 475 MobiDBLite consensus disorder prediction 122 141 - -
Cca10g00861 475 Pfam UBA-like domain (DUF1421) 421 465 IPR010820 -
Cca10g00861 475 PANTHER RECEPTOR-LIKE KINASE, PUTATIVE (DUF1421)-RELATED 1 473 - -
Cca10g00861 475 Coils Coil 97 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00861 Cca-Chr10 9904000 9907914 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00861 23 126 Trihelix Transcription Factor Family AT5G14540 36.538 2.84e-19 88.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00861 - - ccaj:109810355 885.945
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00861 10 9904000 9907914 Cca10g00861 10 9904000 9907914 ECH