Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00857 ATGGCCTCAGACCAGTATTTAGAGGAGGATGTTCCCCAATTAGATTCCTTCGAAGATAAATCATCTCTGGAAACATGGAAATGTGCCAGTGATGATACTGCAGATTCTGCTGCTAGAAATGCTTCTACTGGCTTTGATTGCAACATCTGCCTGGAGTGTGTGCAAGATCCAGTGGTCACTCTTTGTGGTCATCTCTACTGCTGGGCCTGCATTTATAAATGGCTTAATTTCCATGGTGTGTCTTCTGAAAATGAAGAGAAGCAACAATGTCCAGTTTGCAAATCAGAAATATCAGAGTCATCCCTTGTTCCATTATACGGCCGGGGCCAAACTGCCGTACCTTCTACCAAAAGCAAGGGCCACCAAGTGGGGATTGTCATACCAAGAAGACCCCTTGGTCCTTCATGGATGGCTAGCTCACCAAGATCACTTGATTCTGCAACTGTTTCCCGACCTACTTCTCATGTTTATCATCGCCATTATGGTAATCATCCTCAATTCAACTCCATTCCAGGCAGTTATACTTCACCTGTGTTCAACACAGGTGGTTCACCAATAAATGCATTTGATACATCATATGGAGTCTTTGGTGAGATGATATATGCAAGGGTCTTTGGAAACCAGATGACAAACATATACACATATCCAAATTCATATGATGGTTCTGGGAGAACTAATCCAAGGATCAACAGGCATATAATGCAAGTTGATAGGTCACTCAGTAGAATCTGTTTTTTTCTCCTTTGCTGCATAGTTTTGTGTCTTCTCTTATTCTGA 777 0.4221 MASDQYLEEDVPQLDSFEDKSSLETWKCASDDTADSAARNASTGFDCNICLECVQDPVVTLCGHLYCWACIYKWLNFHGVSSENEEKQQCPVCKSEISESSLVPLYGRGQTAVPSTKSKGHQVGIVIPRRPLGPSWMASSPRSLDSATVSRPTSHVYHRHYGNHPQFNSIPGSYTSPVFNTGGSPINAFDTSYGVFGEMIYARVFGNQMTNIYTYPNSYDGSGRTNPRINRHIMQVDRSLSRICFFLLCCIVLCLLLF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00857 258 ProSiteProfiles Zinc finger RING-type profile. 47 94 IPR001841 -
Cca10g00857 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 3 258 IPR045103 GO:0005783|GO:0006511|GO:0061630
Cca10g00857 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 110 IPR013083 -
Cca10g00857 258 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RMA1 3 258 - -
Cca10g00857 258 SUPERFAMILY RING/U-box 44 106 - -
Cca10g00857 258 SMART ring_2 47 93 IPR001841 -
Cca10g00857 258 CDD RING-HC_AtRMA_like 45 95 - -
Cca10g00857 258 Pfam Zinc finger, C3HC4 type (RING finger) 47 93 IPR018957 GO:0046872
Cca10g00857 258 ProSitePatterns Zinc finger RING-type signature. 62 71 IPR017907 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00857 Cca-Chr10 9857484 9860436 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00857 32 258 C3H Transcription Factor Family AT4G28270 36.325 7.83e-40 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00857 K10666 - gmx:100785491 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00857 10 9857484 9860436 Cca10g00857 10 9857484 9860436 ECH