Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00853 ATGCAGCACCACGGTCCCTCCGCTGTGTTTTTTCTTCTAAGCTCATGCTTTTCATTTGCGCTGGTGTACGCGCAAGAACACTCCGCTCGTCGTAGCGTTCTGGACCAACGTTGGTTCCCCGGACACGCCACATGGTACGGCGAGCCCGAGGGAGACGGTAGCAACGGAGGAGCGTGTGGATATGGTAAGTTGGTGAACTCGAAGCCGATGAAGGGAAGGGTGAGTGCAGGTGCGCCGGTGCTGTTTCAGAAGGGGAAAGGGTGTGGGGCGTGCTACAAGGTGAAGTGTTTGGACCATACCATATGTTCGAAGAGAGCGGTGACGGTGACGATAACGGATGAGTGCCCCGGCTGTCGCACTGACAAAACGCACTTCGATCTTAGTGGTGCTGCCTTCGGTCGACTGGCTCTTCCTGGCCAACACAATCAGCTCAGGAACCGAGGTGAACTCCCTATCAGTTACCGAAGAACACCATGCAAGTATGGTGGCAAAACCCTTGGCTTCCATGTCAATGAAGGTTCATCAGCCTATTGGCTATCACTTATGGTAGTCTATGCAGGTGGAGATGGGGACATCGCCTCCATGCATATACAACAAGCAGGGTCGAGTGAGTGGATGCAGATGAAACATTTATGGGGTGCATATTGGGTGATTATAAAGGGGCCTTTAAAAGGACCTTTCTCTGTTAAAATAAGCACATCCACTGGGAAAAGCCTCACTGCCAAAAATGTTATTCCAAGCAATTGGACTCCAAATGCCACTTATAACTCTCACTCAAAGTTTTAG 786 0.5089 MQHHGPSAVFFLLSSCFSFALVYAQEHSARRSVLDQRWFPGHATWYGEPEGDGSNGGACGYGKLVNSKPMKGRVSAGAPVLFQKGKGCGACYKVKCLDHTICSKRAVTVTITDECPGCRTDKTHFDLSGAAFGRLALPGQHNQLRNRGELPISYRRTPCKYGGKTLGFHVNEGSSAYWLSLMVVYAGGDGDIASMHIQQAGSSEWMQMKHLWGAYWVIIKGPLKGPFSVKISTSTGKSLTAKNVIPSNWTPNATYNSHSKF 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00853 261 Pfam Expansin C-terminal domain 167 246 IPR007117 -
Cca10g00853 261 PANTHER EXPANSIN-B3 11 261 - -
Cca10g00853 261 Gene3D - 23 159 IPR036908 -
Cca10g00853 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 164 IPR007112 -
Cca10g00853 261 PRINTS Major pollen allergen Lol pI signature 76 87 IPR005795 GO:0005576|GO:0019953
Cca10g00853 261 PRINTS Major pollen allergen Lol pI signature 114 129 IPR005795 GO:0005576|GO:0019953
Cca10g00853 261 PRINTS Major pollen allergen Lol pI signature 136 151 IPR005795 GO:0005576|GO:0019953
Cca10g00853 261 PRINTS Major pollen allergen Lol pI signature 168 183 IPR005795 GO:0005576|GO:0019953
Cca10g00853 261 PRINTS Major pollen allergen Lol pI signature 184 199 IPR005795 GO:0005576|GO:0019953
Cca10g00853 261 PRINTS Major pollen allergen Lol pI signature 213 230 IPR005795 GO:0005576|GO:0019953
Cca10g00853 261 PRINTS Major pollen allergen Lol pI signature 233 250 IPR005795 GO:0005576|GO:0019953
Cca10g00853 261 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576
Cca10g00853 261 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576
Cca10g00853 261 PRINTS Expansin/Lol pI family signature 78 96 IPR007118 GO:0005576
Cca10g00853 261 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576
Cca10g00853 261 PRINTS Expansin/Lol pI family signature 205 219 IPR007118 GO:0005576
Cca10g00853 261 PRINTS Expansin/Lol pI family signature 243 257 IPR007118 GO:0005576
Cca10g00853 261 SUPERFAMILY PHL pollen allergen 164 257 IPR036749 -
Cca10g00853 261 Pfam Lytic transglycolase 75 154 IPR009009 -
Cca10g00853 261 PANTHER EXPANSIN-LIKE PROTEIN B1 11 261 - -
Cca10g00853 261 SUPERFAMILY Barwin-like endoglucanases 33 163 IPR036908 -
Cca10g00853 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 177 257 IPR007117 -
Cca10g00853 261 Gene3D - 160 258 IPR036749 -
Cca10g00853 261 SMART dpbb_1 74 154 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00853 Cca-Chr10 9830210 9832153 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00853 35 261 Expansin Gene Family AT1G65680 50.435 4.23e-82 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00853 K20628 - gmx:100780112 399.053
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00853 10 9830210 9832153 Cca10g00853 10 9830210 9832153 ECH