Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00849 ATGGCTGGAGCTAACAGTGGGAAATTCGATGTGGGAGATGAAACTCACAAAGCTTCCCAACAGGGTTGTGGTAGTAGTGAAAGCCGAGATTGGGAGATTGAGAAGGGAAAGGGCGTGGATTCGAGCTCTCAGAGGCGTCAATGGAAGCCAGTTTTTGATGACGCTTCCATCTCACACAATAGACCTCTGAAGAAAATCCGCAGCCCCGATCGCCATAACACAAACCAATCCTATTCTTCTTCTCTTCCTTTTCAACCTTCTCCACTCTCAGCTCTTCCTTCATCCTCTTCAAGAATAGTTTTCCCCTTCGCCTTCGACCCTTCCCAAATGCAATTCCCACACCAATCACCTCTCCCAAACcaacaacaacaacaacaaATGATATCATTCGGCTCCCAGCAACAACATAACCTTCCCTATCCACCAATCATAGCCCGAGATTCTTCGCTTCTAcatcaacatcttcatcatcatcatcaacatcatcatcaacagcagcatcatcaACAACAGCTTCTTCAGTATTGGAGTGATGCTTTGAATCTAAGTCCACGAGGAATGTTGGCAAGGGTGGGGCCAGATGGAAGGCCATTGTTTAGGCCTCCAACGCAGCCCATAAACACGACTAAGCTCTATAGAGGAGTGAGGCAACGCCATTGGGGAAAATGGGTGGCTGAAATTCGTCTTCCTCGAAACAGAACACGTCTCTGGCTAGGCACATTCGACACTGCCGAGGACGCCGCCATGGCCTACGACCGTGAAGCCTTCAAGCTAAGAGGAGAAAATGCCAGGCTCAATTTCCCTGAACTCTTCCTCaacaaggacaaaaaacaagaacaagaagaacaagaaTCTTCTTCCCTGACCACCGGTAAAGAACAGCATGAACCTCTGTCTGACCGTGACGTCCAATTACCCTCGAGTAATGAGAACGACTCGGGAATTGGGTCGAGTGACATCACGGCCAGCGATGAGGTTCATGCTGAAGTTACCGGTGGTTCTGAGGGAATATCTCAGGAACTGGTTTGGGGAGAAATGTCTGCATGGTTCAATGCTATTCCGGGTCCTGGTAGTCCCATGTGGGATGATTTGGATACCACCAATAATCTTCTCTATCACTCACACATTCCTATTGCAAATCCCAATCAACAACAATCCAATGATGCCTCTAATGATGCTCAGAGACAAGAACATAACATGGGACCAGGTTACTTATGGAAGGATCAGGATTGA 1233 0.442 MAGANSGKFDVGDETHKASQQGCGSSESRDWEIEKGKGVDSSSQRRQWKPVFDDASISHNRPLKKIRSPDRHNTNQSYSSSLPFQPSPLSALPSSSSRIVFPFAFDPSQMQFPHQSPLPNQQQQQQMISFGSQQQHNLPYPPIIARDSSLLHQHLHHHHQHHHQQQHHQQQLLQYWSDALNLSPRGMLARVGPDGRPLFRPPTQPINTTKLYRGVRQRHWGKWVAEIRLPRNRTRLWLGTFDTAEDAAMAYDREAFKLRGENARLNFPELFLNKDKKQEQEEQESSSLTTGKEQHEPLSDRDVQLPSSNENDSGIGSSDITASDEVHAEVTGGSEGISQELVWGEMSAWFNAIPGPGSPMWDDLDTTNNLLYHSHIPIANPNQQQSNDASNDAQRQEHNMGPGYLWKDQD 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00849 410 CDD AP2 210 270 IPR001471 GO:0003700|GO:0006355
Cca10g00849 410 MobiDBLite consensus disorder prediction 1 89 - -
Cca10g00849 410 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 1 389 - -
Cca10g00849 410 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF053 1 389 - -
Cca10g00849 410 SUPERFAMILY DNA-binding domain 211 269 IPR016177 GO:0003677
Cca10g00849 410 MobiDBLite consensus disorder prediction 271 332 - -
Cca10g00849 410 MobiDBLite consensus disorder prediction 271 300 - -
Cca10g00849 410 ProSiteProfiles AP2/ERF domain profile. 211 268 IPR001471 GO:0003700|GO:0006355
Cca10g00849 410 MobiDBLite consensus disorder prediction 28 42 - -
Cca10g00849 410 SMART rav1_2 211 274 IPR001471 GO:0003700|GO:0006355
Cca10g00849 410 MobiDBLite consensus disorder prediction 379 397 - -
Cca10g00849 410 MobiDBLite consensus disorder prediction 72 89 - -
Cca10g00849 410 Pfam AP2 domain 212 260 IPR001471 GO:0003700|GO:0006355
Cca10g00849 410 MobiDBLite consensus disorder prediction 379 410 - -
Cca10g00849 410 MobiDBLite consensus disorder prediction 301 320 - -
Cca10g00849 410 PRINTS Ethylene responsive element binding protein signature 212 223 IPR001471 GO:0003700|GO:0006355
Cca10g00849 410 PRINTS Ethylene responsive element binding protein signature 234 250 IPR001471 GO:0003700|GO:0006355
Cca10g00849 410 Gene3D AP2/ERF domain 211 269 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00849 Cca-Chr10 9787772 9789984 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00849 30 380 AP2-EREBP Transcription Factor Family AT2G20880 42.700 4.07e-63 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca10g00849 AP2 2.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00849 - - gmx:100809887 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00849 10 9787772 9789984 Cca10g00849 10 9787772 9789984 ECH