Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00842 ATGGGTTGTTGTGTCTCAACAAGCAGTCAGAGTACTTGTAGTAGCAGGAGCAATGTAGACACAATCACTCCAACGTGTCTAGAATTTGGATTCTGTGGTCAAAAGAGTGCAAAGAGAACATTCTCTGATCATGTTGTTTCTCTGCACCAATTACCATCCTTACCAAACAGAATTTTTACTAATGGAAAGAGCAGGTCTTCTTGCATATTTACACAGCAGGGTCGAAAGGGTGTTAATCAGGATGCCATGATTGTATGGGAAGATTTCATGTCAGAAGATGTGACATTTTGTGGTGTCTTTGATGGCCATGGTCCTCATGGCCACCTTGTTGCACGCAAAGTCAGGGAAGCGTTGCCACTAAAACTGCTTTCATTTTTGCATTCCTCCGAATCAGGGCGAAATGGTTCGGGTAAAGATTGTTTCAGAGGCAACATGAAGCCTGAAAGTGGAGAGTCTGAGAAAGATGTCCCTGCTGAAGATAAATTGAACTCTATGTGGAAAGAAGCTTTCATGAAGGCATTCAAGGCTATGGATAAAGAGCTGAGGTCTCATCCAAATTTGGACTGCTTCTGTAGTGGGAGCACAGCTGTCACGATAGTGAAGCAGGGTTCAAATTTGTTCATGAGCAATATTGGTGATTCCCGAGCAATCATGGGATCAAAAGACAGCAATGACTCCATGGTGGCAATTCAGTTGACTGTTGATTTGAAGCCTGATTTGCCAAGGGAAGCAGAAAGAATTAAACGGTGCAAGGGTAGGGTATTTGCATTGCAAGATGAGCCAGAAGTTCATAGGGTGTGGTTGCCTTTTGATGATGCACCAGGATTAGCAATGGCTAGAGCATTTGGAGATTTTTGCTTGAAGGAATATGGTGTGATTTCTATACCTGAATTTTCTCATCGGCAGCTTACTGACAAGGATCAGTTCATTGTTCTTGCTTCAGATGGGGTTTGGGATGTTTTGAGCAATGAAGAGGTGGTTGAGATAGTATCTTCAGCATCAACACGATCATCAGCGGCAAGGACTCTGGTGGATTCAGCAGCTCGAGAGTGGAAACTTAAGTATCCGACTTCAAGAATGGATGACTGTGCTGTCGTATGCCTATTTTTGGATGGAAAAATGGATGCAGAATCTGATTGTGATGAGCAATGCTTCTCTTCTGCAACCATCCCGTGCAATGATTCGGACGATGGTAAAAAGTCTGAGCCATCTTTGCAAAGGAACTTTACTGTGAGATCCTCAGAAGAAAGTGAAACCTATGGAGGAGTGGTATCTGTTGATGTTGAAGATGGAAAATCAGCAGCTGAAGATCAAAACTGGTCAGGTCTTGAGGGCGTCACCCGAGTAAACTCACTTGTTCAACTTCCTAGATTTTCTGAGGAAAGGCTAAAGTCTTGA 1398 0.4328 MGCCVSTSSQSTCSSRSNVDTITPTCLEFGFCGQKSAKRTFSDHVVSLHQLPSLPNRIFTNGKSRSSCIFTQQGRKGVNQDAMIVWEDFMSEDVTFCGVFDGHGPHGHLVARKVREALPLKLLSFLHSSESGRNGSGKDCFRGNMKPESGESEKDVPAEDKLNSMWKEAFMKAFKAMDKELRSHPNLDCFCSGSTAVTIVKQGSNLFMSNIGDSRAIMGSKDSNDSMVAIQLTVDLKPDLPREAERIKRCKGRVFALQDEPEVHRVWLPFDDAPGLAMARAFGDFCLKEYGVISIPEFSHRQLTDKDQFIVLASDGVWDVLSNEEVVEIVSSASTRSSAARTLVDSAAREWKLKYPTSRMDDCAVVCLFLDGKMDAESDCDEQCFSSATIPCNDSDDGKKSEPSLQRNFTVRSSEESETYGGVVSVDVEDGKSAAEDQNWSGLEGVTRVNSLVQLPRFSEERLKS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00842 465 MobiDBLite consensus disorder prediction 132 158 - -
Cca10g00842 465 CDD PP2Cc 65 370 IPR001932 -
Cca10g00842 465 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 1 453 - -
Cca10g00842 465 Pfam Protein phosphatase 2C 81 348 IPR001932 -
Cca10g00842 465 SMART PP2C_4 55 368 IPR001932 -
Cca10g00842 465 PANTHER ALPHABET, ISOFORM E-RELATED 1 453 - -
Cca10g00842 465 MobiDBLite consensus disorder prediction 144 158 - -
Cca10g00842 465 Gene3D - 57 372 IPR036457 -
Cca10g00842 465 SUPERFAMILY PP2C-like 59 372 IPR036457 -
Cca10g00842 465 MobiDBLite consensus disorder prediction 392 412 - -
Cca10g00842 465 ProSiteProfiles PPM-type phosphatase domain profile. 66 370 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00842 Cca-Chr10 9683824 9688113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00842 1 465 PP2C-type Phosphatase Gene Family AT1G03590 70.488 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00842 - - gmx:100788149 828.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca10g00842 10 9683824 9688113 Cca10g00842 10 9683824 9688113 ECH
Cca10g00842 10 9683824 9688113 Cca04g01099 04 12344704 12350067 PCT