Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca10g00836 ATGAAGAAGGGTGAGAGGGCCCTAATTAGCATACATCCTGATTATGCGTTTGGAAATGTTGAAGCGAGACGAGATTTGGCTATTGTGCCACCAGGCTTAAATGAGAAAGCACCGTGGGAATTGAATAGTAAGGAAAAAATTGAGGTGGCTGGGAGGAAGAAAGAAGAAGGAAATGTATTATTTAAAGATGGCAATTATCAGCGAGTAGGGAAGAAGTATGAAAAGGTGCTTGATGTTGAATTTTGCAATGTGAAAGCCTTCTACAGACGAGCACAAGCATATATAGAAACTAGTGACTTCCTTTTAGCAGATGTAGAAATCAAGAAAGCTCTCGAGGTGGACCCACAAAACAGGGAGGTAAAGGTAATTCAGAAGAAGTTGAAGCAACTTCAAGCTGACAGTGACAAAAAGGATGCTAATCTATACGAAAACATGTTTGCCCGTAAAACAAAGGACTCGTCTATGGCTATAAAGAGATTAAAGGTTGAGAAAGATGAGAGGGAAAATGAAGAGGTTGCTAGAATGGGAATGGACGAAGTGGCTGATAGCACAGTGATTTAA 561 0.4029 MKKGERALISIHPDYAFGNVEARRDLAIVPPGLNEKAPWELNSKEKIEVAGRKKEEGNVLFKDGNYQRVGKKYEKVLDVEFCNVKAFYRRAQAYIETSDFLLADVEIKKALEVDPQNREVKVIQKKLKQLQADSDKKDANLYENMFARKTKDSSMAIKRLKVEKDERENEEVARMGMDEVADSTVI 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca10g00836 186 SUPERFAMILY TPR-like 57 146 IPR011990 GO:0005515
Cca10g00836 186 PANTHER PEPTIDYLPROLYL ISOMERASE 75 169 - -
Cca10g00836 186 PANTHER PEPTIDYLPROLYL ISOMERASE 26 76 - -
Cca10g00836 186 Coils Coil 120 140 - -
Cca10g00836 186 ProSiteProfiles TPR repeat profile. 84 117 IPR019734 GO:0005515
Cca10g00836 186 Gene3D Tetratricopeptide repeat domain 79 144 IPR011990 GO:0005515
Cca10g00836 186 Gene3D Tetratricopeptide repeat domain 33 78 IPR011990 GO:0005515
Cca10g00836 186 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 75 169 - -
Cca10g00836 186 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 26 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca10g00836 Cca-Chr10 9640974 9643936 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca10g00836 1 148 Calmodulin-binding Proteins AT5G48570 40.670 6.25e-43 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca10g00836 K09571 - gmx:100798382 298.516